PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.013G149200.1
Common NamePOPTR_0013s14560g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 257aa    MW: 29405.7 Da    PI: 4.4672
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.013G149200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.87.9e-161461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd +l  +v+++G  +W+  ++  g+ R++k+c++rw++yl
  Potri.013G149200.1 14 KGAWTPEEDRKLMAYVTRYGCWNWRQLPKFAGLQRCGKSCRLRWLNYL 61
                        79******************99************************97 PP
2Myb_DNA-binding52.71e-1667111147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg+ ++eE+e ++ +++ +G++ W++Ia+ ++ gRt++++k++w++ 
  Potri.013G149200.1  67 RGNYSKEEEETIISLHETMGNR-WSAIAAQLP-GRTDNEIKNHWHTN 111
                         899*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.3E-24564IPR009057Homeodomain-like
PROSITE profilePS5129415.805961IPR017930Myb domain
SuperFamilySSF466891.23E-2911108IPR009057Homeodomain-like
SMARTSM007174.2E-91363IPR001005SANT/Myb domain
PfamPF002498.2E-141461IPR001005SANT/Myb domain
CDDcd001671.95E-81661No hitNo description
PROSITE profilePS5129424.60262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-2565116IPR009057Homeodomain-like
SMARTSM007171.1E-1666114IPR001005SANT/Myb domain
PfamPF002491.7E-1567111IPR001005SANT/Myb domain
CDDcd001671.50E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MVRTPCCDKT GLKKGAWTPE EDRKLMAYVT RYGCWNWRQL PKFAGLQRCG KSCRLRWLNY  60
LRPNIKRGNY SKEEEETIIS LHETMGNRWS AIAAQLPGRT DNEIKNHWHT NLKKRLRKKS  120
VLEAKEMSSD DDLSQDDKNQ EKDTEETDIS TQNPATSNEI IESPSSTMSP QASSSDISTI  180
DNVAATDWDL ISDNNFAFLE AYEAPSGNFW TEPFLSDDYF MPNDFMAPLV DPDSPFFDGE  240
FSSPFAFIDM EDCNLY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-28121165108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.013G149200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002319935.10.0transcription factor MYB4
TrEMBLB9I6H80.0B9I6H8_POPTR; Uncharacterized protein
STRINGPOPTR_0013s14560.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.11e-62myb domain protein 14