PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.013G156200.2
Common NamePOPTR_0013s15220g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family LBD
Protein Properties Length: 200aa    MW: 21402.3 Da    PI: 8.303
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.013G156200.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260128.72.5e-40181171100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                         +CaaCk+lrr+Ca++C+++pyf  ++p+kfa+vhk++Gasnv+kll ++pe++r d+++slvyeA+ r+rdPvyG++g i++lqqq+++l+
  Potri.013G156200.2  18 PCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVYGASNVSKLLMEVPESQRVDTANSLVYEANLRLRDPVYGSMGAISALQQQIQSLQ 108
                         7****************************************************************************************** PP

              DUF260  92 aelallkee 100
                         ael+++++e
  Potri.013G156200.2 109 AELSAIRAE 117
                         ****99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.77417118IPR004883Lateral organ boundaries, LOB
PfamPF031953.7E-4018115IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MGRRQMLGPP VILNTVTPCA ACKLLRRRCA EECPFSPYFS PHEPQKFAAV HKVYGASNVS  60
KLLMEVPESQ RVDTANSLVY EANLRLRDPV YGSMGAISAL QQQIQSLQAE LSAIRAEILN  120
YKYREAAAAT NIISSTHPAL VSSATVSIST PSQTLAPPPQ PPPPSVVVSS SSSSSLYTPP  180
TSTSGYSTIS SENNVPYFD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A9e-431812511118LOB family transfactor Ramosa2.1
5ly0_B9e-431812511118LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in shoots and roots and at low levels in flowers, but not in leaves or inflorescence stems. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.013G156200.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB9707800.0AB970780.1 Populus tremula x Populus tremuloides PtxtLBD15a mRNA for LOB domain-containing protein 15, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002319420.11e-142LOB domain-containing protein 15 isoform X1
SwissprotQ9AT612e-69LBD13_ARATH; LOB domain-containing protein 13
TrEMBLB9I6X01e-141B9I6X0_POPTR; LBD family protein
STRINGPOPTR_0013s15220.11e-142(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40470.13e-62LOB domain-containing protein 15
Publications ? help Back to Top
  1. Cho C,Jeon E,Pandey SK,Ha SH,Kim J
    LBD13 positively regulates lateral root formation in Arabidopsis.
    Planta, 2019. 249(4): p. 1251-1258
    [PMID:30627888]