PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.013G156900.2

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bZIP

Protein Properties

Length: 343aa MW: 36825.8 Da PI: 7.3771

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.013G156900.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.9	5.8e-10	198	247	5	54
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l+ + Potri.013G156900.2 198 KRAKRILANRQSAARSKERKARYILELERKVQTLQTEATTLSAQLSLFQR 247 9*****************************************99987665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.9E-16	194	258	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.622	196	259	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	8.2E-9	198	250	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	8.6E-10	198	252	No hit	No description
SuperFamily	SSF57959	3.16E-10	198	249	No hit	No description
CDD	cd14703	2.41E-23	199	248	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
METRDPLSKP PQNSDPPKPN NPNPNPTVSP SSSSSSSSSM FNNIRGGAHH RRAHSEMSFR 60 LPEDMTMMMM DLHPSDQING GNGIGIGNGN GNGGSSTGSL EEIGSEDDLF STYIDVDKLT 120 GGNNGNGTGV GNQNDNDNTI NGEKGGVSDS GPGSGTSRPK HRHSYSVDGS VFGGGEVMEA 180 KKAMPPNKLA ELWSIDPKRA KRILANRQSA ARSKERKARY ILELERKVQT LQTEATTLSA 240 QLSLFQRDTT GLSTENTELK LRLQAMEQQA QLRDALNEAL KKEVGRLKIA TGEMLSPSDS 300 YNLGMHQMPF TPSNFFPLPS QPGPAGHPNM QLPSFTHSPS RA*

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

METRDPLSKP PQNSDPPKPN NPNPNPTVSP SSSSSSSSSM FNNIRGGAHH RRAHSEMSFR  60
LPEDMTMMMM DLHPSDQING GNGIGIGNGN GNGGSSTGSL EEIGSEDDLF STYIDVDKLT  120
GGNNGNGTGV GNQNDNDNTI NGEKGGVSDS GPGSGTSRPK HRHSYSVDGS VFGGGEVMEA  180
KKAMPPNKLA ELWSIDPKRA KRILANRQSA ARSKERKARY ILELERKVQT LQTEATTLSA  240
QLSLFQRDTT GLSTENTELK LRLQAMEQQA QLRDALNEAL KKEVGRLKIA TGEMLSPSDS  300
YNLGMHQMPF TPSNFFPLPS QPGPAGHPNM QLPSFTHSPS RA*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. Strongly expressed in mature pollen. {ECO:0000269\|PubMed:27896439}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.013G156900.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC214418	0.0	AC214418.1 Populus trichocarpa clone POP106-D21, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024438908.1	0.0	transcription factor RF2b
Swissprot	O22873	5e-97	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A2K1Y668	0.0	A0A2K1Y668_POPTR; Uncharacterized protein
STRING	POPTR_0013s15280.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	2e-95	bZIP family protein

Link Out ? help Back to Top
Phytozome	Potri.013G156900.2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]