PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.013G156900.3
Common NamePOPTR_0013s15280g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bZIP
Protein Properties Length: 380aa    MW: 41228.7 Da    PI: 6.809
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.013G156900.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.76.9e-10181230554
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 
                         kr++r   NR +A rs +RK  +i eLe+kv++L++e ++L  +l+  + 
  Potri.013G156900.3 181 KRAKRILANRQSAARSKERKARYILELERKVQTLQTEATTLSAQLSLFQR 230
                         9*****************************************99987665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.9E-16177241IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.622179242IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.02E-10181232No hitNo description
Gene3DG3DSA:1.20.5.1701.1E-9181235No hitNo description
PfamPF001709.7E-9181233IPR004827Basic-leucine zipper domain
CDDcd147031.17E-23182231No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
METRDPLSKP PQNSDPPKPN NPNPNPTVSP SSSSSSSSSM FNNIRGGAHH RRAHSEMSFR  60
LPEDMTMMMM DLHPSDQING GSLEEIGSED DLFSTYIDVD KLTGGNNGNG TGVGNQNDND  120
NTINGEKGGV SDSGPGSGTS RPKHRHSYSV DGSVFGGGEV MEAKKAMPPN KLAELWSIDP  180
KRAKRILANR QSAARSKERK ARYILELERK VQTLQTEATT LSAQLSLFQR DTTGLSTENT  240
ELKLRLQAME QQAQLRDALN EALKKEVGRL KIATGEMLSP SDSYNLGMHQ MPFTPSNFFP  300
LPSQPGPAGH PNMQLPSFTH SPSSMSTRHI HQVDSQSLSD YMQNDPIGRL QGLDISNKGS  360
HIVKSEGPSL SASESSTTF*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at high levels in roots, low level in leaf sheath, but not in leaf blade. Predominantly expressed in vascular tissues. {ECO:0000269|PubMed:14704272}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:14704272}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.013G156900.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2144180.0AC214418.1 Populus trichocarpa clone POP106-D21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024438908.10.0transcription factor RF2b
SwissprotQ6S4P41e-102RF2B_ORYSJ; Transcription factor RF2b
TrEMBLA0A2I4KKZ60.0A0A2I4KKZ6_POPTR; BZIP family protein
STRINGPOPTR_0013s15280.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40620.11e-99bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Dai S,Zhang Z,Bick J,Beachy RN
    Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus.
    J. Gen. Virol., 2006. 87(Pt 3): p. 715-22
    [PMID:16476995]
  3. Liu Y,Dai S,Beachy RN
    Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription.
    Biochem. J., 2007. 405(2): p. 243-9
    [PMID:17371296]
  4. Dai S, et al.
    Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease.
    Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6
    [PMID:19104064]