PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G009500.1
Common NamePOPTR_0014s00690g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 171aa    MW: 19588.8 Da    PI: 10.1856
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G009500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY31.82.9e-1028602860
                        -STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY 28 tsagCpvkkkversaedpkvveitYegeHnhek 60
                        + +gCp++k+vers edp+++++ Y+ge nh+k
  Potri.014G009500.1 28 SRRGCPARKHVERSLEDPSMLVVAYKGERNHSK 60
                        3459***************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007744.6E-52260IPR003657WRKY domain
PROSITE profilePS5081111.7492561IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.4E-92760IPR003657WRKY domain
PfamPF031062.8E-62858IPR003657WRKY domain
SuperFamilySSF1182902.09E-63059IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MGELVQVFKP WHPIDINSLV SKETKSSSRR GCPARKHVER SLEDPSMLVV AYKGERNHSK  60
IAFQSPSMYL TTKSNHRTIV FSKLELFATA KIEFSSLVFQ YLSTQKKESI NQDFCHMPYQ  120
IYINKDHNKS TCCTTGWKIQ DLWILNLVAG LKILGRAFRP KTLKFADPHI *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G009500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2092271e-151AC209227.1 Populus trichocarpa clone POP074-P16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB9NDT51e-125B9NDT5_POPTR; Uncharacterized protein
STRINGPOPTR_0014s00690.11e-126(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.14e-13WRKY DNA-binding protein 21