PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.014G017400.1

Common Name

POPTR_0014s01770g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

LBD

Protein Properties

Length: 209aa MW: 22465.4 Da PI: 7.3401

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.014G017400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	96.7	2.4e-30	2	105	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +C++C+vlr++C++ Cvl+ ++ p++q +++ +++k+FG+s +++l++a+pe++r+ +++sl++eA+ r+ +Pv+Gavg++++++++ Potri.014G017400.1 2 SCNGCRVLRKGCSETCVLRSCLhwiptPEAQGNATLFLAKFFGRSDLISLISAVPESQRPVLFQSLLFEACGRTVNPVNGAVGLLWSGNWH 92 6**********************9999********************************************************** PP DUF260 87 leqlkaelallke 99 ++q+++e +l++e Potri.014G017400.1 93 VCQAAVESVLAGE 105 ****9998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.532	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.4E-25	2	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MSCNGCRVLR KGCSETCVLR SCLHWIPTPE AQGNATLFLA KFFGRSDLIS LISAVPESQR 60 PVLFQSLLFE ACGRTVNPVN GAVGLLWSGN WHVCQAAVES VLAGETLRPL PGILTGVLAP 120 NCDESSDSFS AAAYAVHSMT WNQSKPFDKE NNNQVVSDHH VNLCLARGRG GRDKRGRDAV 180 SFYTGGESET TSFESSGADK NKLLNLFV*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.014G017400.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002320036.1	1e-154	LOB domain-containing protein 39
Swissprot	Q9SN23	3e-62	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	B9IBU3	1e-152	B9IBU3_POPTR; LBD family protein
STRING	POPTR_0014s01770.1	1e-153	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF721	34	136
Representative plant	OGRP403	16	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	1e-64	LOB domain-containing protein 38

Link Out ? help Back to Top
Phytozome	Potri.014G017400.1
Entrez Gene	7488873