PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.014G025300.2

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

WOX

Protein Properties

Length: 173aa MW: 19517.2 Da PI: 10.4686

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.014G025300.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.8	5.8e-21	78	137	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+ +Le l++ r+p+ +++e+++++l +++ ++V++WFqN++a+e++ Potri.014G025300.2 78 TRWNPTQEQIGILEMLYRGgMRTPNGQQIEDITAQLsrygKIEGKNVFYWFQNHKARERQ 137 7***************99************************************97 PP
2	Wus_type_Homeobox	117.8	4.8e-38	78	139	4	65
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 tRW+Pt+eQi iLe+ly+ G+rtPn ++i++ita+L++yGkie+kNVfyWFQN+kaRerqkq Potri.014G025300.2 78 TRWNPTQEQIGILEMLYRGGMRTPNGQQIEDITAQLSRYGKIEGKNVFYWFQNHKARERQKQ 139 8***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.863	73	138	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.99E-12	74	144	IPR009057	Homeodomain-like
SMART	SM00389	5.2E-6	75	142	IPR001356	Homeobox domain
CDD	cd00086	9.23E-5	78	139	No hit	No description
Pfam	PF00046	1.0E-18	78	137	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.7E-7	79	137	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001944	Biological Process	vasculature development
GO:0007165	Biological Process	signal transduction
GO:0010067	Biological Process	procambium histogenesis
GO:0051301	Biological Process	cell division
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MGSMKVHQLA RGFWEHEPSL TLGCKRLRPL APKLANTDHS VTSFDLKSFI RPDSGPRKLA 60 SSDEKKDSPQ GETHPGGTRW NPTQEQIGIL EMLYRGGMRT PNGQQIEDIT AQLSRYGKIE 120 GKNVFYWFQN HKARERQKQK RNSLGLSHSP RTPSPITIIS LDTRVCHCTQ QP*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.16313	0.0	stem

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.014G025300.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF145702	0.0	EF145702.1 Populus trichocarpa clone WS0112_M11 unknown mRNA.
GenBank	KF982704	0.0	KF982704.1 Populus tomentosa WOX4b (WOX4b) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006374903.1	1e-119	WUSCHEL-related homeobox 4
Swissprot	Q6X7J9	5e-62	WOX4_ARATH; WUSCHEL-related homeobox 4
TrEMBL	W8Q031	1e-117	W8Q031_POPTO; Homeobox-leucine zipper transcription factor family protein-like 3
STRING	POPTR_0014s02540.1	1e-118	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46480.1	2e-64	WUSCHEL related homeobox 4

Link Out ? help Back to Top
Phytozome	Potri.014G025300.2

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605] Guo X, et al. Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation. PLoS Pathog., 2017. 13(2): p. e1006142 [PMID:28158306] Denis E, et al. WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis. Plant J., 2017. 90(3): p. 560-572 [PMID:28218997] Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees. New Phytol., 2017. 215(2): p. 642-657 [PMID:28609015] Yamaguchi YL, et al. Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots. Front Plant Sci, 2017. 8: p. 1195 [PMID:28747918]