PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G031600.1
Common NamePOPTR_0014s03120g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 228aa    MW: 25504.5 Da    PI: 10.5445
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G031600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.95e-15127217198
                         EEEE-..-HHHHTT-E.E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                  B3   1 ffkvltpsdvlksgrl.vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                         f+k +++s+v+   +l +lp +f++++   ++++  +tl de+  +++v++  r+++    l++GWk+F+ a+gL +gD vvF+l++   +
  Potri.014G031600.1 127 FIKSMLQSHVTGGFWLgCLPLDFCRRNL--PRRGDFITLIDEDADEYQVTYLARQNG----LSGGWKGFAVAHGLLDGDAVVFQLIK--PT 209
                         899**********99999******9994..345568***************555555....9**********************997..55 PP

                         ..EEEEE- CS
                  B3  91 elvvkvfr 98 
                         +++v ++r
  Potri.014G031600.1 210 TCKVYIIR 217
                         56788776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.2E-17121219IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.85E-21121220IPR015300DNA-binding pseudobarrel domain
CDDcd100171.39E-23125217No hitNo description
PfamPF023621.4E-12127217IPR003340B3 DNA binding domain
SMARTSM010197.4E-19127219IPR003340B3 DNA binding domain
PROSITE profilePS5086310.588145219IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MAAKVTAYEE SRRKRMEENK KRMEALNLHK LSRALKISTP TKSSPLKRSK PRVVEKQVVV  60
VRRSNRIANK PAPFFKEAVI DRVVIPRRIS KAADLSNLVF ATDEARAKAI EKAEKLQSDL  120
GSDYPTFIKS MLQSHVTGGF WLGCLPLDFC RRNLPRRGDF ITLIDEDADE YQVTYLARQN  180
GLSGGWKGFA VAHGLLDGDA VVFQLIKPTT CKVYIIRVNG SEQGNSL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.35190.0bud| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G031600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1469780.0EF146978.1 Populus trichocarpa clone WS01225_L06 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006374960.11e-168B3 domain-containing protein At5g42700
SwissprotQ9FMZ42e-68Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBLU5FTX01e-167U5FTX0_POPTR; Uncharacterized protein
STRINGPOPTR_0014s03120.11e-168(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33363168
Representative plantOGRP9951658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.16e-51B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]