PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G031700.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 227aa    MW: 25600.8 Da    PI: 10.6722
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G031700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.63.6e-16127216198
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         f+k +++s+v+   +l lp +f++++   ++++  +tl de+  +++v +  rk++    l++GWk+F+ a+gL +gD vvF+l++   + 
  Potri.014G031700.1 127 FIKSMLQSHVTGGFWLGLPVDFCRRNL--PRRDDVITLIDEEADEYQVIYLARKNG----LSGGWKGFAVAHGLLDGDAVVFQLIKP--TA 209
                         89**********************994..345668***************667776....***********************9974..33 PP

                         .EEEEE- CS
                  B3  92 lvvkvfr 98 
                         ++v ++r
  Potri.014G031700.1 210 CKVYIIR 216
                         5677666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-18121218IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.44E-23121219IPR015300DNA-binding pseudobarrel domain
CDDcd100173.75E-25125216No hitNo description
SMARTSM010195.5E-22127218IPR003340B3 DNA binding domain
PfamPF023627.3E-14127216IPR003340B3 DNA binding domain
PROSITE profilePS5086311.928127218IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MVAKISAYEE SRRKRMEENK KRMEALNLHK LSRALKISTP TKSSPMKRSK PRVVEKQVVV  60
VRRSSRVANK PAPFFKEVVL DRVVIPRRIS KARDLSNRVY ATDEARAKAM EKAEKLQSDL  120
GSDYPIFIKS MLQSHVTGGF WLGLPVDFCR RNLPRRDDVI TLIDEEADEY QVIYLARKNG  180
LSGGWKGFAV AHGLLDGDAV VFQLIKPTAC KVYIIRVNGS EQGNSL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.35190.0bud| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G031700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1469780.0EF146978.1 Populus trichocarpa clone WS01225_L06 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024441189.11e-166B3 domain-containing protein At5g42700
RefseqXP_024441190.11e-166B3 domain-containing protein At5g42700
SwissprotQ9FMZ42e-77Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBLA0A2K1XPS31e-165A0A2K1XPS3_POPTR; Uncharacterized protein
STRINGPOPTR_0014s03120.11e-141(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33363168
Representative plantOGRP9951658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.13e-60B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]