PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.014G036600.1

Common Name

POPTR_0014s03590g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Dof

Protein Properties

Length: 262aa MW: 27530.2 Da PI: 6.3803

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.014G036600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118.8	2.1e-37	27	86	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++ l+cprC+st tkfCyynny+lsqPr+fCk+CrryWt+GG+lr+vPvGgg+rkn k+s Potri.014G036600.1 27 TEPLPCPRCNSTTTKFCYYNNYNLSQPRHFCKSCRRYWTQGGTLRDVPVGGGTRKNSKRS 86 67899***************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-24	28	78	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.6E-32	29	84	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.059	30	84	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	32	68	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MPTEISQGHP TEAQNTMGAT HQPPKTTEPL PCPRCNSTTT KFCYYNNYNL SQPRHFCKSC 60 RRYWTQGGTL RDVPVGGGTR KNSKRSRSTS NNSSSISTSS SNSTSSNSAT LTAFTTTHEP 120 ESMPVVLSST TDSGLAAVKT EVPAGLNLND GLPSEDGNFI SLMNSNDQHG FTGLGGYGYA 180 SGFGFGPSEM GIGFGGRGSW SCPVMENVLV NGGTSGCHPW QLDCDHVEGG GLQAGFTADT 240 ENYFGSWPDL VMSAPAGKGL N*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.7967	0.0	stem

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00189	DAP	Transfer from AT1G47655	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.014G036600.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006375014.1	0.0	dof zinc finger protein DOF1.6
TrEMBL	B9MVJ0	0.0	B9MVJ0_POPTR; Uncharacterized protein
STRING	POPTR_0014s03590.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2801	31	68
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G47655.1	2e-37	Dof family protein

Link Out ? help Back to Top
Phytozome	Potri.014G036600.1
Entrez Gene	18104957