PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G050000.2
Common NamePOPTR_0014s04890g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 176aa    MW: 20112 Da    PI: 6.3955
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G050000.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY33.58.7e-11154175122
                         ---SS-EEEEEEE--TT-SS-E CS
                WRKY   1 ldDgynWrKYGqKevkgsefpr 22 
                         ldDgy+WrKYGqK+vk+s +pr
  Potri.014G050000.2 154 LDDGYKWRKYGQKVVKNSLHPR 175
                         59*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-12139175IPR003657WRKY domain
SuperFamilySSF1182901.29E-9146175IPR003657WRKY domain
PROSITE profilePS5081113.448149175IPR003657WRKY domain
PfamPF031065.7E-7155175IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MHQISQQEEE EEAQEGQRSF LIRMDHGERD VPNYELHVSF STPQAIHEMG FVQFEENQVL  60
SFLAPSQSSQ ISQPLNANTT TTNNTHMGFS HNDQQVGALD PKASSDENCT GNANNDGNNS  120
WWRSSSADKN KLKVRRKLRE PRFCFQTRSE VDVLDDGYKW RKYGQKVVKN SLHPR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132138KVRRKLR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00618PBMTransfer from AT2G44745Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G050000.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006375168.11e-130probable WRKY transcription factor 12
SwissprotQ93WY48e-42WRK12_ARATH; Probable WRKY transcription factor 12
TrEMBLU5FPM11e-129U5FPM1_POPTR; WRKY family protein
STRINGPOPTR_0014s04890.11e-130(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44745.14e-37WRKY family protein
Publications ? help Back to Top
  1. Yu Y, et al.
    MlWRKY12, a novel Miscanthus transcription factor, participates in pith secondary cell wall formation and promotes flowering.
    Plant Sci., 2013. 212: p. 1-9
    [PMID:24094048]
  2. Yang L, et al.
    PtrWRKY19, a novel WRKY transcription factor, contributes to the regulation of pith secondary wall formation in Populus trichocarpa.
    Sci Rep, 2016. 6: p. 18643
    [PMID:26819184]
  3. Li W,Wang H,Yu D
    Arabidopsis WRKY Transcription Factors WRKY12 and WRKY13 Oppositely Regulate Flowering under Short-Day Conditions.
    Mol Plant, 2016. 9(11): p. 1492-1503
    [PMID:27592586]
  4. Han Y, et al.
    WRKY12 represses GSH1 expression to negatively regulate cadmium tolerance in Arabidopsis.
    Plant Mol. Biol., 2019. 99(1-2): p. 149-159
    [PMID:30617455]