PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G058600.1
Common NamePOPTR_0014s05760g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GATA
Protein Properties Length: 252aa    MW: 27963.8 Da    PI: 6.9183
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G058600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.24.5e-18165199135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C++C + kTp+WR gp g+ktLCnaCG++y++ +l
  Potri.014G058600.1 165 CTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRL 199
                         *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.2E-751249IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.464159195IPR000679Zinc finger, GATA-type
SMARTSM004011.5E-16159209IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.108.9E-14163197IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.52E-14163223No hitNo description
CDDcd002026.20E-14164211No hitNo description
PfamPF003206.6E-16165199IPR000679Zinc finger, GATA-type
PROSITE patternPS003440165190IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009416Biological Processresponse to light stimulus
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MDVYGGLSTT TAPDYFHIDD LLDFSNDDLL SSPSSSIDHH HHLPPPETSS IHHHHFPSST  60
YINNPSSLST DFTDHLSVPT DDVAELEWLS QFVEDSFSDF PSIINIPTDT SFCNKSRSKR  120
SRATATTATS SSPELETAVT GKSRLKKENN GAPHSPAEEG TVRRCTHCAS EKTPQWRTGP  180
LGPKTLCNAC GVRYKSGRLV PEYRPAASPT FVLTRHSNSH RKVLELRRQK EMTVGRQQQQ  240
QQHGYQGYEV C*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in roots. Also expressed in flowers and leaves, and to a lower extent in stems. {ECO:0000269|PubMed:12139008}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G058600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006375265.10.0GATA transcription factor 2
RefseqXP_024440654.10.0GATA transcription factor 2
RefseqXP_024440655.10.0GATA transcription factor 2
SwissprotO497415e-73GATA2_ARATH; GATA transcription factor 2
TrEMBLU5FUV20.0U5FUV2_POPTR; GATA transcription factor
STRINGPOPTR_0014s05760.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF135501925
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.13e-61GATA transcription factor 4
Publications ? help Back to Top
  1. Jiang K,Yung V,Chiba T,Feldman LJ
    Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain.
    Planta, 2018. 247(4): p. 831-843
    [PMID:29249045]