PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G060500.1
Common NamePOPTR_0014s05940g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 700aa    MW: 76977.6 Da    PI: 6.1762
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G060500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS312.31.1e-953446984374
                GRAS   4 lLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                          + ++Ae +++g+  laq +Larl+++ + p g+p qR a+yf+ AL+  l+        + + s ++  + + ++ a+k fse+sPil+f
  Potri.014G060500.1 344 PICQAAELIETGNPVLAQGILARLNHQlSLPIGKPYQRTAFYFKDALQLLLHT-------SNNNSIDNACSLIFKIGAYKSFSEISPILQF 427
                         5789*********************99788999*******************9.......334444445679******************* PP

                GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                         +++t+Nq +lea eg er+Hi+Dfdi++G+QW++L+q+La R++g+psl+iT+++sp+s+++ el  t+e+L+ fA+e+++pfe ++l  +
  Potri.014G060500.1 428 ANFTCNQVLLEASEGFERIHIVDFDIGYGGQWASLMQELALRTGGAPSLKITAFASPSSHDELELGFTRENLRIFASEINMPFELEILSLE 518
                         ***************************************************************************************9777 PP

                GRAS 185 rledl.eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                         +l +   +  Lr+ ++E++aVnl +    + +++ +l+      L++vk+lsPkvvv  ++ +d+++ +F++++ +a++ ys+l++sl+a 
  Potri.014G060500.1 519 SLGSGsWPMPLRMPEKEVTAVNLPIGS--FSNDTSTLPL----ALRFVKHLSPKVVVSLDRGCDRSDLPFAHHVNHAIQSYSTLLESLDAV 603
                         66665257789*************955..5545555555....9********************************************665 PP

                GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdr 365
                            + ++ +k+E +l+++ i+++v  +++       + + Wr+ + ++GF+p+p+s+++++qa++l+++++++g++ve+++ slvl+W+++
  Potri.014G060500.1 604 -NVNLDALQKIESFLVQPGIEKIVLGRHRC----PDRTSPWRSLFLQSGFTPLPFSNFTESQAEYLVHRTPVRGFHVEKRQSSLVLCWQRK 689
                         .3566999*****************99887....88899**************************************************** PP

                GRAS 366 pLvsvSaWr 374
                          L+++SaWr
  Potri.014G060500.1 690 DLIAASAWR 698
                         ********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.735315678IPR005202Transcription factor GRAS
PfamPF035143.6E-93344698IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    Send to blast
MKAMPLPFEN FQGKGVLDFS SSTTSSPDSL HLHHQKWQNN NSKESCGFFL GSTEPTSVLD  60
TISRQSPPTS SSTLSSSQGG GGGGGGASTD TTNGVAAAGG SNPCVDEKCG QQLGMEDWES  120
VLPGSPSQEQ SILRLIMGDI EDPSVGLHKL LQSGSRSEDM EHASGFGVVD QVFGFDVSSM  180
SSASANLVAN NSIDPSSIHG INLLPGLFQQ QQQQAAFDQD EKPQILNPVM ISNQNQHQFV  240
QNPATPFPFS YSQLQEHHNN QHFLSPPPSK RLNSGPVGVN YVPKVFDSRP PELFLPRQHQ  300
QQQQNHQFRM LQQLQQRQGM ITNQKIASDE LANQQQLQQA IINPICQAAE LIETGNPVLA  360
QGILARLNHQ LSLPIGKPYQ RTAFYFKDAL QLLLHTSNNN SIDNACSLIF KIGAYKSFSE  420
ISPILQFANF TCNQVLLEAS EGFERIHIVD FDIGYGGQWA SLMQELALRT GGAPSLKITA  480
FASPSSHDEL ELGFTRENLR IFASEINMPF ELEILSLESL GSGSWPMPLR MPEKEVTAVN  540
LPIGSFSNDT STLPLALRFV KHLSPKVVVS LDRGCDRSDL PFAHHVNHAI QSYSTLLESL  600
DAVNVNLDAL QKIESFLVQP GIEKIVLGRH RCPDRTSPWR SLFLQSGFTP LPFSNFTESQ  660
AEYLVHRTPV RGFHVEKRQS SLVLCWQRKD LIAASAWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-3135669818375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G060500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2118040.0AC211804.1 Populus trichocarpa clone POP017-B20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024441223.10.0scarecrow-like protein 6
RefseqXP_024441224.10.0scarecrow-like protein 6
SwissprotO813161e-150SCL6_ARATH; Scarecrow-like protein 6
TrEMBLA0A2K1XR730.0A0A2K1XR73_POPTR; Uncharacterized protein
STRINGPOPTR_0014s05940.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31833170
Representative plantOGRP17501242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-144GRAS family protein
Publications ? help Back to Top
  1. Bari A,Orazova S,Ivashchenko A
    miR156- and miR171-binding sites in the protein-coding sequences of several plant genes.
    Biomed Res Int, 2013. 2013: p. 307145
    [PMID:23936788]
  2. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]