PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G060500.2
Common NamePOPTR_0014s05940g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 667aa    MW: 73117.3 Da    PI: 5.8779
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G060500.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS312.59.3e-963116654374
                GRAS   4 lLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                          + ++Ae +++g+  laq +Larl+++ + p g+p qR a+yf+ AL+  l+        + + s ++  + + ++ a+k fse+sPil+f
  Potri.014G060500.2 311 PICQAAELIETGNPVLAQGILARLNHQlSLPIGKPYQRTAFYFKDALQLLLHT-------SNNNSIDNACSLIFKIGAYKSFSEISPILQF 394
                         5789*********************99788999*******************9.......334444445679******************* PP

                GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                         +++t+Nq +lea eg er+Hi+Dfdi++G+QW++L+q+La R++g+psl+iT+++sp+s+++ el  t+e+L+ fA+e+++pfe ++l  +
  Potri.014G060500.2 395 ANFTCNQVLLEASEGFERIHIVDFDIGYGGQWASLMQELALRTGGAPSLKITAFASPSSHDELELGFTRENLRIFASEINMPFELEILSLE 485
                         ***************************************************************************************9777 PP

                GRAS 185 rledl.eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                         +l +   +  Lr+ ++E++aVnl +    + +++ +l+      L++vk+lsPkvvv  ++ +d+++ +F++++ +a++ ys+l++sl+a 
  Potri.014G060500.2 486 SLGSGsWPMPLRMPEKEVTAVNLPIGS--FSNDTSTLPL----ALRFVKHLSPKVVVSLDRGCDRSDLPFAHHVNHAIQSYSTLLESLDAV 570
                         66665257789*************955..5545555555....9********************************************665 PP

                GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdr 365
                            + ++ +k+E +l+++ i+++v  +++       + + Wr+ + ++GF+p+p+s+++++qa++l+++++++g++ve+++ slvl+W+++
  Potri.014G060500.2 571 -NVNLDALQKIESFLVQPGIEKIVLGRHRC----PDRTSPWRSLFLQSGFTPLPFSNFTESQAEYLVHRTPVRGFHVEKRQSSLVLCWQRK 656
                         .3566999*****************99887....88899**************************************************** PP

                GRAS 366 pLvsvSaWr 374
                          L+++SaWr
  Potri.014G060500.2 657 DLIAASAWR 665
                         ********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.735282645IPR005202Transcription factor GRAS
PfamPF035143.2E-93311665IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
MKAMPLPFEN FQGKGVLDFS SSTTSSPDSL HLHHQKWQNN NSKESCGFFL GSTEPTSVLD  60
TISRQSPPTS SSTLSSSQGG GGGGGGASTD TTNGVAAAGG SNPCVDEKCG QQLGMEDWES  120
VLPGSPSQEQ SILRLIMGDI EDPSVGLHKL LQSGSRSEDM EHASGFGVVD QVFGFDVSSM  180
SSASANLVAN NSIDPSSIHG INLLPGLFQQ QQQQAAFDQD EKPQILNPVM ISNQNQHQLN  240
SGPVGVNYVP KVFDSRPPEL FLPRQHQQQQ QNHQFRMLQQ LQQRQGMITN QKIASDELAN  300
QQQLQQAIIN PICQAAELIE TGNPVLAQGI LARLNHQLSL PIGKPYQRTA FYFKDALQLL  360
LHTSNNNSID NACSLIFKIG AYKSFSEISP ILQFANFTCN QVLLEASEGF ERIHIVDFDI  420
GYGGQWASLM QELALRTGGA PSLKITAFAS PSSHDELELG FTRENLRIFA SEINMPFELE  480
ILSLESLGSG SWPMPLRMPE KEVTAVNLPI GSFSNDTSTL PLALRFVKHL SPKVVVSLDR  540
GCDRSDLPFA HHVNHAIQSY STLLESLDAV NVNLDALQKI ESFLVQPGIE KIVLGRHRCP  600
DRTSPWRSLF LQSGFTPLPF SNFTESQAEY LVHRTPVRGF HVEKRQSSLV LCWQRKDLIA  660
ASAWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-3132366518375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G060500.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2118040.0AC211804.1 Populus trichocarpa clone POP017-B20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024441223.10.0scarecrow-like protein 6
RefseqXP_024441224.10.0scarecrow-like protein 6
SwissprotO813161e-150SCL6_ARATH; Scarecrow-like protein 6
TrEMBLA0A2K1XR730.0A0A2K1XR73_POPTR; Uncharacterized protein
STRINGPOPTR_0014s05940.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-144GRAS family protein
Publications ? help Back to Top
  1. Bari A,Orazova S,Ivashchenko A
    miR156- and miR171-binding sites in the protein-coding sequences of several plant genes.
    Biomed Res Int, 2013. 2013: p. 307145
    [PMID:23936788]
  2. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]