PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G066500.2
Common NamePOPTR_0014s06190g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 452aa    MW: 48831.2 Da    PI: 8.0761
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G066500.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.57.5e-16297342555
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         hn+ Er+RRd+iN+++ +L++l+P++      K +Ka++L +++eY+k+Lq
  Potri.014G066500.2 297 HNQSERKRRDKINQRMKTLQKLVPSS-----SKTDKASMLDEVIEYLKQLQ 342
                         9************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.07E-19290357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.587292341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-13297342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.74E-17297346No hitNo description
Gene3DG3DSA:4.10.280.101.8E-18297352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-18298347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MSHQCVPSWE VDDNRTTAPK LSLRFHSNSS APDMPMLDYE VAELTWENGQ IAMHGLGPPR  60
VPAKPIASTS PSKYTWDKPR ASGTLESIVN QATCVPQCNK ATFDNSTGSD HDLIPWFNHH  120
KASASATMTM DALVPCSNRS DQGRTTHVID SGPAGLGTCV VGCSTRVGSC SAPAATQDED  180
GLLTGKRARV ARVPVPPEWS RDQSVNHSAT FGKKDSQQMT VDSCEREFGV GFTSTSFGSQ  240
ENTSSGTNPC TKTLTADEND SVCHSRPQRE AGKEDDKKKG NGKSSVSTKR SRAAAIHNQS  300
ERKRRDKINQ RMKTLQKLVP SSSKTDKASM LDEVIEYLKQ LQAQVQMMSR MNMQPMMLPL  360
ALQQQLQMSM MAPMSIGMAG MGMGMGVMDM NTIAARSNMT GIPPALHPTA FIPLTTWDGS  420
SGHDRLQTTA ADPMSAFLAC QTQVIISSIN S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1300305ERKRRD
2301306RKRRDK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in stems and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtRequired during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G066500.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002320711.20.0transcription factor UNE10
SwissprotQ8GZ381e-105UNE10_ARATH; Transcription factor UNE10
TrEMBLB9IBW90.0B9IBW9_POPTR; Uncharacterized protein
STRINGPOPTR_0014s06190.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.14e-92bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]