PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G067900.1
Common NamePOPTR_0014s06340g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 121aa    MW: 13430.7 Da    PI: 10.824
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G067900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.51.7e-11489185
                        EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEE.TTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE- CS
                  B3  1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltled.esgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkld 85
                        f k lt+ d ++  rl++p k +++    g      ++  ++d +sg++W +++ +rkks     l k+W++Fv++++L +gD ++F+  
  Potri.014G067900.1  4 FSKLLTKTDIGT--RLSVPTKSLKSLpcfGRG--HAIDFHVQDaQSGEVWIFRCVIRKKSHPkPALCKNWRKFVSSKRLSVGDKIIFSTL 89
                        556666666665..49*******999998544..4567899998999*******887777656999*********************943 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.1E-15391IPR015300DNA-binding pseudobarrel domain
CDDcd100174.81E-15386No hitNo description
SuperFamilySSF1019361.7E-12389IPR015300DNA-binding pseudobarrel domain
PfamPF023629.0E-9590IPR003340B3 DNA binding domain
PROSITE profilePS508638.72740109IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MAIFSKLLTK TDIGTRLSVP TKSLKSLPCF GRGHAIDFHV QDAQSGEVWI FRCVIRKKSH  60
PKPALCKNWR KFVSSKRLSV GDKIIFSTLA EDQASTGGAQ YKIEVKRQTK IFGVSLGYFP  120
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G067900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011011302.17e-35PREDICTED: AP2/ERF and B3 domain-containing transcription repressor RAV2-like
RefseqXP_024442553.18e-35AP2/ERF and B3 domain-containing protein Os01g0693400-like
TrEMBLB9IBY25e-83B9IBY2_POPTR; Uncharacterized protein
STRINGPOPTR_0014s06340.18e-84(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2060778