PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G068000.1
Common NamePOPTR_0014s06350g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 115aa    MW: 13085.4 Da    PI: 10.3854
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G068000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.98.6e-14488184
                        EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEE.E CS
                  B3  1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFk.l 84
                        f k lt+ d  k  rl++p k++++    g      ++  ++de g++W++++++ +k+  + v++k W++Fv++++L++gD ++F+ l
  Potri.014G068000.1  4 FSKSLTKTDIEK--RLSFPTKCLRSLpcfGR--GHAVDFHVMDECGQVWTFRCTIrKKNHPKPVISKDWSKFVSSKHLDVGDKITFSkL 88
                        556665555544..59*******999*9743..356899**************8845555569***********************933 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.32E-15391IPR015300DNA-binding pseudobarrel domain
CDDcd100173.99E-17385No hitNo description
Gene3DG3DSA:2.40.330.101.7E-17391IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.00134102IPR003340B3 DNA binding domain
PfamPF023621.1E-11690IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
MAIFSKSLTK TDIEKRLSFP TKCLRSLPCF GRGHAVDFHV MDECGQVWTF RCTIRKKNHP  60
KPVISKDWSK FVSSKHLDVG DKITFSKLEN KVSCAFYKIE VKKPVKLFGV NVGY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G068000.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011011302.11e-39PREDICTED: AP2/ERF and B3 domain-containing transcription repressor RAV2-like
TrEMBLB9IBY33e-78B9IBY3_POPTR; Uncharacterized protein
STRINGPOPTR_0014s06350.14e-79(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2060778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.22e-08related to ABI3/VP1 2