PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G070300.1
Common NamePOPTR_0014s06580g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family LBD
Protein Properties Length: 180aa    MW: 19389.1 Da    PI: 8.2924
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G070300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.11.7e-39121121100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                         +C aCk+lr+kC+k+C++apyf  +q +++fa+vhk+FGasn +kll ++p ++r da+ +l+yeA ar+rdPvyG+vg+i++lqqq+ +l
  Potri.014G070300.1  12 PCGACKFLRKKCVKGCIFAPYFDPDQgTAHFAAVHKVFGASNASKLLLRIPAHKRLDAVVTLCYEALARVRDPVYGCVGHIFTLQQQVLNL 102
                         7*********************777769*************************************************************** PP

              DUF260  91 kaelallkee 100
                         +aela ++++
  Potri.014G070300.1 103 QAELAFIQAH 112
                         *****99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.00811113IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-3812110IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MMSAGANNGS GPCGACKFLR KKCVKGCIFA PYFDPDQGTA HFAAVHKVFG ASNASKLLLR  60
IPAHKRLDAV VTLCYEALAR VRDPVYGCVG HIFTLQQQVL NLQAELAFIQ AHLSTLQRLP  120
QPQPPSQCAQ SPSQTTLDSS SEVPSFTKLA SSSNISTHFD QLQVQQTSTE MTGFYNPSE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-3831061104LOB family transfactor Ramosa2.1
5ly0_B4e-3831061104LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G070300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002320729.21e-131LOB domain-containing protein 19
SwissprotO813222e-66LBD31_ARATH; LOB domain-containing protein 31
TrEMBLB9IC041e-130B9IC04_POPTR; Uncharacterized protein
STRINGPOPTR_0014s06580.11e-130(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Representative plantOGRP40515100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.11e-59LOB domain-containing protein 31