PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G083700.2
Common NamePOPTR_0014s07940g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family BES1
Protein Properties Length: 538aa    MW: 59826.8 Da    PI: 7.225
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G083700.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822139.92.4e-43521902133
              DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr...kgskpl.eeaeaagssas. 87 
                         g++ +++ +E+E++k+RER+RRai+a+i+aGLR++Gny+l++raD+n+V++AL+reAGwvv +DGtt++   +gs+p   +++a+ ss+s 
  Potri.014G083700.2  52 GTRMSRPLEEKERTKLRERHRRAITARILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPsrsQGSRPAgGTSAAVTSSSSh 142
                         45556789************************************************************98888999996444444333332 PP

              DUF822  88 .aspesslq.sslkssalaspvesysaspksssfpspssldsislasa 133
                          +s+ ++   +  +s   ++ ve  s+++k   +p ps +d   ++++
  Potri.014G083700.2 143 lVSQPTPPGsLGGVSPGHRTSVEYNSCRMKGAFIPNPSPYDLSASTQS 190
                         3455555444667899999*********************98866543 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056873.1E-3755183IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514451.22E-122237524IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.801.1E-138240524IPR013781Glycoside hydrolase, catalytic domain
PfamPF013732.8E-78244524IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.6E-40275289IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.6E-40296314IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.6E-40318339IPR001554Glycoside hydrolase, family 14
PROSITE patternPS005060322330IPR018238Glycoside hydrolase, family 14, conserved site
PRINTSPR007503.6E-40411433IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.6E-40484503IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MDVKEEDDDN RGKLIAAQMM VGMDGGMTSN SSNNQFQHHQ QFQEHVSSPG GGTRMSRPLE  60
EKERTKLRER HRRAITARIL AGLRRHGNYN LRVRADINDV IAALAREAGW VVLPDGTTFP  120
SRSQGSRPAG GTSAAVTSSS SHLVSQPTPP GSLGGVSPGH RTSVEYNSCR MKGAFIPNPS  180
PYDLSASTQS QTPGMVGEGR EQTESDPRVG GSMDTINDKQ IVDIPPIPKL PEQDFAGSPF  240
IPVYVMLPLG AINMKCELVD PDGLLKQLKV LKSANVDGVM VYCWWGIVEA HAPQEYNWNG  300
YKRLFQMVHE LKLKLQVVMS FHECGGNVGD DVCIPLPNWV AEIGRSNPDI FFTDREGRHN  360
PECLSWGIDK ERVLRGRTAI EVYFDYMRSF RAEFDEFFVD GIISMVEVGL GPCGELRYPS  420
CPVKHGWRYP GIGEFQCYDK YFLKSLKKTA EVRGHPFRAR GPDNAGSYNS QPHETGFFCD  480
GGEYDGYYGR FFLNWYARIL VDHGDRVLSL AKLAFEGTRI AVKVFIGGTR HPVMLLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1bfn_A1e-10524052811298BETA-AMYLASE
1q6c_A1e-10524052811298beta-amylase
1wdp_A1e-10524052811298Beta-amylase
1wdr_A1e-10524052811298Beta-amylase
1wds_A1e-10524052811298Beta-amylase
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.118660.0bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G083700.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024441307.10.0LOW QUALITY PROTEIN: beta-amylase 7
SwissprotO808310.0BAM7_ARATH; Beta-amylase 7
TrEMBLA0A3N7FY510.0A0A3N7FY51_POPTR; Beta-amylase
STRINGPOPTR_0014s07940.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.10.0beta-amylase 7
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]