PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G094200.2
Common NamePOPTR_0014s08990g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bZIP
Protein Properties Length: 346aa    MW: 36842 Da    PI: 8.6805
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G094200.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_170.32.9e-22232294163
                         XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         ++elkrerrkq+NRe+ArrsR+RK+ae eeL+ kv++L++ N++Lk+e+++ +++++kl+ e+
  Potri.014G094200.2 232 DRELKRERRKQSNRESARRSRLRKQAEAEELAHKVETLTTVNMTLKSEIDQFTEKSQKLRLEN 294
                         689********************************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077775.4E-35193IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.8E-14126187No hitNo description
Gene3DG3DSA:1.20.5.1702.6E-16226291No hitNo description
SMARTSM003382.1E-21232296IPR004827Basic-leucine zipper domain
PfamPF001701.1E-20233294IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.289234297IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.0E-10235291No hitNo description
CDDcd147023.53E-19237286No hitNo description
PROSITE patternPS000360239254IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MGNNEEGKSS ASDKSSPAQQ DQTSIHVYPD WAAIQAYYGS RVALPPYYNS GVASGHAPHP  60
YMWGPPQPMM ATYGAPYAAI YSHGGVYAHP AVPIGSHPHG PGVLSSPAAH TPLSAETPTK  120
SSGNTDQGLM KKLKGFDGLA MSIGNGDAES AEGGSRLPQS METEGSSDGS DGNTARGKKR  180
SREGTPTVVV DPGMTKALEL RNPPSVNVAK TNPATIPQPG AMLPSEAWSP NDRELKRERR  240
KQSNRESARR SRLRKQAEAE ELAHKVETLT TVNMTLKSEI DQFTEKSQKL RLENAALTEK  300
LKNAQLGPTQ EIILNNIDEQ RSSNSGAKLH QLMDASPRAD AVAAG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1248254RRSRLRK
2248255RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.76250.0bud
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G094200.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2080945e-45AC208094.1 Populus trichocarpa clone JGIACSB09-L10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024441247.10.0G-box-binding factor 3 isoform X6
SwissprotQ990891e-114CPRF1_PETCR; Common plant regulatory factor 1
TrEMBLA0A2K1XSY10.0A0A2K1XSY1_POPTR; Uncharacterized protein
STRINGPOPTR_0014s08990.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.11e-114G-box binding factor 3
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]
  2. Feldbrügge M,Hahlbrock K,Weisshaar B
    The transcriptional regulator CPRF1: expression analysis and gene structure.
    Mol. Gen. Genet., 1996. 251(6): p. 619-27
    [PMID:8757392]