PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G103700.3
Common NamePOPTR_0014s09950g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 431aa    MW: 47688.8 Da    PI: 6.6755
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G103700.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.44.6e-12254299454
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         +h e+Er+RR+++N++f  Lr ++P+       +++Ka+ L  Av YI+++
  Potri.014G103700.3 254 NHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVSYINEM 299
                         799***********************6.....4***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.4E-4525179IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.577250299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-17251312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.52E-13253303No hitNo description
Gene3DG3DSA:4.10.280.102.9E-16254314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-9254299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-15256305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MEGLIISPSS SSSLVSLSHE TPPTLQQRLQ FIVQSQPDRW SYSIFWQASK DDSGQIFLAW  60
GDGHFQGSKD TSPKLSTTNN SRMSTSNSER KRWFYVMSLT RSFSPGDGIL GKAYTTGSLI  120
WLTGGHELQF YNCERVKEAQ MHGIETLICI PTSCGVLELG SSCVIRENWG IVQQAKSLFV  180
SDLNSCLVPK GPNNPCQEPI QFLDRNISLA DGGIIAGLQE DDHTIEHGEK RTQERAETKK  240
DNVNKLGQSG APLNHVEAER QRREKLNHRF YALRAVVPNV SRMDKASLLS DAVSYINEMK  300
AKVDKLESKL QRESKKVKLE VADTMDNQST TTSVDQAACR PNSNSGGAGL ALEVEVKFVG  360
NDAMIRVQSD NVNYPGSRLM SALRDLEFQV HHASMSSVNE LMLQDVVVRV PDGLRTEEAL  420
KSALLGRLEQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A5e-28241798192Transcription factor MYC3
4rqw_B5e-28241798192Transcription factor MYC3
4rs9_A5e-28241798192Transcription factor MYC3
4yz6_A5e-28241798192Transcription factor MYC3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G103700.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1469390.0EF146939.1 Populus trichocarpa clone WS01225_C18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024440348.10.0transcription factor MYC2 isoform X1
RefseqXP_024440349.10.0transcription factor MYC2 isoform X2
TrEMBLA0A2K1XTE60.0A0A2K1XTE6_POPTR; Uncharacterized protein
STRINGPOPTR_0014s09950.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.18e-85bHLH family protein