PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G106300.2
Common NamePOPTR_0014s10190g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 325aa    MW: 36892.9 Da    PI: 5.4595
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G106300.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH361.3e-11132183155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +r++h ++Er+RR+ +N+ ++ Lr+l+ ++   + +K + a+i   A++++k+L+
  Potri.014G106300.2 132 QRMNHIAVERNRRRLMNDHLNSLRSLMTPS---YIQKGDQASIIGGAIDFVKELE 183
                         79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.76E-11130187No hitNo description
PROSITE profilePS5088814.513131182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-15131198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-12132194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-9132183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-8137188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MERLQGPINS CFLEEHSLDL GCFDQVFINT ESLRFEEEEP HISSPSFEDK MPFLQMLQTV  60
ETPPFFPYKE PSFQTLLKLQ HLQKPWNMNT FYMPETDTQV QPLELESCVT HDIRRKRKRT  120
RATKNKEEVE SQRMNHIAVE RNRRRLMNDH LNSLRSLMTP SYIQKGDQAS IIGGAIDFVK  180
ELEQLVQSLE AQKKIREIET ASTAGISPNQ YSTSQPQCDL LLEEGGTCEE ERTVKKKSEA  240
TEIEVAAVQN HVNLKIKCQR IPGQLLRAIV ALEDLGLTVL HLNITSSQAT VLYSFNLKLE  300
DNCKLGSTDE VAAAAHQIFS SISG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113118RRKRKR
2132143RMNHIAVERNRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.88370.0bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G106300.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011039375.11e-143PREDICTED: transcription factor bHLH57-like isoform X1
SwissprotQ700E49e-77BH067_ARATH; Transcription factor bHLH67
TrEMBLA0A2K1XTK01e-138A0A2K1XTK0_POPTR; Uncharacterized protein
STRINGPOPTR_0002s18100.11e-173(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01460.15e-75bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Yu H,Murchie EH,González-Carranza ZH,Pyke KA,Roberts JA
    Decreased photosynthesis in the erect panicle 3 (ep3) mutant of rice is associated with reduced stomatal conductance and attenuated guard cell development.
    J. Exp. Bot., 2015. 66(5): p. 1543-52
    [PMID:25582452]