PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.014G108000.1

Common Name

POPTR_0014s10360g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 247aa MW: 28569.6 Da PI: 5.0505

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.014G108000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	143.9	8.9e-45	7	136	2	127
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkd 89 p+G+ FhPtdeelv++yL+ k++g ++ ++i+e++++++ePw Lp+ ++k+ ++ e+yfF++r+ kya+++r+nr+t++gyWk tgkd Potri.014G108000.1 7 PVGYGFHPTDEELVTYYLRFKMHGGYEQEVSIIAEANVCDYEPWVLPElsAIKEpNDPECYFFCPRSYKYANSDRANRTTQAGYWKVTGKD 97 79*********************9888899**********953444443555***************************** PP NAM 90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127 + v++k ++e++ +kktLvfykgr p+g ktdW+mhey+ Potri.014G108000.1 98 RIVKTKtTKEHIATKKTLVFYKGRVPNGIKTDWIMHEYH 136 99877888**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.32E-48	5	154	IPR003441	NAC domain
PROSITE profile	PS51005	47.504	6	155	IPR003441	NAC domain
Pfam	PF02365	5.6E-25	7	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MNSRPPPVGY GFHPTDEELV TYYLRFKMHG GYEQEVSIIA EANVCDYEPW VLPELSAIKE 60 PNDPECYFFC PRSYKYANSD RANRTTQAGY WKVTGKDRIV KTKTTKEHIA TKKTLVFYKG 120 RVPNGIKTDW IMHEYHPNFS FPNQREFVLC KLKKDPHAIK PTYEEGEASF NVTSDHSENQ 180 NSTECHHPQT FEEGEYGAWT VSNFTNNEPE EDTYQFQAQL DSLRGYDIEG CYSLDSALQF 240 PYGDIY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-34	7	154	18	164	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-34	7	154	18	164	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-34	7	154	18	164	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-34	7	154	18	164	NO APICAL MERISTEM PROTEIN
3swm_A	2e-34	7	154	21	167	NAC domain-containing protein 19
3swm_B	2e-34	7	154	21	167	NAC domain-containing protein 19
3swm_C	2e-34	7	154	21	167	NAC domain-containing protein 19
3swm_D	2e-34	7	154	21	167	NAC domain-containing protein 19
3swp_A	2e-34	7	154	21	167	NAC domain-containing protein 19
3swp_B	2e-34	7	154	21	167	NAC domain-containing protein 19
3swp_C	2e-34	7	154	21	167	NAC domain-containing protein 19
3swp_D	2e-34	7	154	21	167	NAC domain-containing protein 19
4dul_A	1e-34	7	154	18	164	NAC domain-containing protein 19
4dul_B	1e-34	7	154	18	164	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.014G108000.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024440064.1	1e-168	protein NTM1-like 9 isoform X5
TrEMBL	B9I965	0.0	B9I965_POPTR; Uncharacterized protein
STRING	POPTR_0014s10360.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2065	25	86
Representative plant	OGRP9281	3	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35580.1	4e-53	NAC transcription factor-like 9

Link Out ? help Back to Top
Phytozome	Potri.014G108000.1
Entrez Gene	7486814