PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G119800.2
Common NamePOPTR_0014s11490g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 236aa    MW: 26838.7 Da    PI: 4.8538
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G119800.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.43.9e-302583259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                        +D ++WrKYGqK++kgs++pr+YYrC+++ gC++kk+ver+++d +v+++tY+++Hnh+
  Potri.014G119800.2 25 SDFWSWRKYGQKPIKGSPYPRGYYRCSTSkGCSAKKQVERCRTDASVLIVTYTSNHNHP 83
                        699***********************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-311785IPR003657WRKY domain
SuperFamilySSF1182904.84E-262185IPR003657WRKY domain
SMARTSM007742.0E-352484IPR003657WRKY domain
PROSITE profilePS5081131.1692585IPR003657WRKY domain
PfamPF031064.0E-252683IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MVEKIVVRVR IGENAVKLKN EGPPSDFWSW RKYGQKPIKG SPYPRGYYRC STSKGCSAKK  60
QVERCRTDAS VLIVTYTSNH NHPGPDLHDS NVNQQPRDPE TPPTDLVDHP ITPKQEKPEE  120
ETGERHDHPI MPSTDEDVSE GHNFHYLESP IRIPQDIMIS QDYPFTENSE KSHDTLGIVF  180
DEEPICCSRL MTFSAPKSEE NNDFFDELEE LPTSSSFTSF VRGNFFDERI PVVPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-2025851779Disease resistance protein RRS1
5w3x_D1e-2025851779Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G119800.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3774230.0GQ377423.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011041119.11e-152PREDICTED: probable WRKY transcription factor 69 isoform X1
TrEMBLB9I9I21e-174B9I9I2_POPTR; Uncharacterized protein
STRINGPOPTR_0014s11490.11e-175(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.14e-33WRKY DNA-binding protein 35