PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G134600.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family DBB
Protein Properties Length: 252aa    MW: 28182.7 Da    PI: 5.1036
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G134600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.42.6e-07751240
            zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                        ++r C+ +++  + l+C+ ++  lC +C  e H+       Ht++
  Potri.014G134600.1  7 QKRLCDYCNDTTALLYCRADSAKLCLSCDHEVHSTnqlfskHTRS 51
                        7899******99*********************668888888875 PP
2zf-B_box25.43e-085296442
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvpl 42
                          C+ ++  ++++fCe+ ++ +C++C le H +       H+++p+
  Potri.014G134600.1 52 LLCDVCHTSPVSIFCETEHSVFCQNCDLERH-NlssfpstHNRRPI 96
                        57*****************************.65888888988776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.5E-13653IPR000315B-box-type zinc finger
PROSITE profilePS5011910.608653IPR000315B-box-type zinc finger
PfamPF006431.4E-5751IPR000315B-box-type zinc finger
CDDcd000212.42E-6953No hitNo description
PROSITE profilePS5011910.2964996IPR000315B-box-type zinc finger
PfamPF006439.1E-75296IPR000315B-box-type zinc finger
CDDcd000219.53E-65396No hitNo description
SMARTSM003360.145496IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MNPKPQQKRL CDYCNDTTAL LYCRADSAKL CLSCDHEVHS TNQLFSKHTR SLLCDVCHTS  60
PVSIFCETEH SVFCQNCDLE RHNLSSFPST HNRRPIEGFT GCPSGNELME ILGFEDMGLK  120
QSMLFSEETD GFMGSGLDDG YSDLFVWDST AVSIDDFIMS SDSGPNLQAL GVPPLPKASS  180
DDFYSQYYEG SNSAHCCSEK SRSKMLFLNQ NRKAACRQHK NEILCQLLEP VTLKPDSYGN  240
AVIYLIKIYF N*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G134600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024440717.11e-131zinc finger protein CONSTANS-LIKE 13
RefseqXP_024440718.11e-131zinc finger protein CONSTANS-LIKE 13
RefseqXP_024440719.11e-131zinc finger protein CONSTANS-LIKE 13
SwissprotO822568e-52COL13_ARATH; Zinc finger protein CONSTANS-LIKE 13
TrEMBLA0A3N7FYS71e-129A0A3N7FYS7_POPTR; Uncharacterized protein
STRINGPOPTR_0014s12900.11e-140(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70553145
Representative plantOGRP7906812
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.28e-55B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]