PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G150600.1
Common NamePOPTR_0014s14830g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 343aa    MW: 36344.3 Da    PI: 8.5635
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G150600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.32e-11275320655
                         HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +++Er RR ri  ++ +L++l+P+     +k  s a++Le+Av++Ik Lq
  Potri.014G150600.1 275 SIAERERRTRISGKLKTLQDLVPNM----DKQTSYADMLELAVKHIKGLQ 320
                         689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.075269319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-14272334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.50E-11273324No hitNo description
Gene3DG3DSA:4.10.280.101.6E-13274332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-9275320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.9E-13275325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MYQQPSSSSS SPQKSNLPSG LTRYGSAPGS FLTRAVDSVI GADRELSGLG STPLVGRQQH  60
FSGDSPSITS ESTCKVNSSS CDRKAPKSGG GGGLQRSYGL NEIAHGAGSL VRQRSSPAGF  120
LSHLATENGG FSITRGTGGY NSRNGSGGGP SRLKSQLSFT RQDSLSQISE VSENVVEGIG  180
SDNGSQNSTH SYSAASFGME SWDTPNSIVF SGHPSKQART GDGDIYSCFN ALETQFSLPQ  240
TSLEMATVEK LLQIPEDSVP CKIRAKRGCA THPRSIAERE RRTRISGKLK TLQDLVPNMD  300
KQTSYADMLE LAVKHIKGLQ NEVEKLHKEL EGCTCGCKQS TP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.91410.0bud| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G150600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1470170.0EF147017.1 Populus trichocarpa clone WS01226_D10 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002321112.10.0transcription factor bHLH128
SwissprotQ8H1025e-92BH128_ARATH; Transcription factor bHLH128
TrEMBLB9IAD10.0B9IAD1_POPTR; Uncharacterized protein
STRINGcassava4.1_010829m1e-170(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76803140
Representative plantOGRP5111580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.13e-88bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]