PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G159500.2
Common NamePOPTR_0014s15770g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 447aa    MW: 48237.1 Da    PI: 8.0613
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G159500.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.53.4e-115275326
                        S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                         + C +++rtG C yG++C+F+H+
  Potri.014G159500.2 52 APDCGYYLRTGLCGYGSNCRFNHP 75
                        589********************9 PP
2zf-CCCH36.58.4e-1294118327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         ++ C ++++tGtCkyG++Ck++H++
  Potri.014G159500.2  94 QPDCGYYLKTGTCKYGSTCKYHHPR 118
                         789********************96 PP
3zf-CCCH34.82.7e-11140163427
                         ---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                         + C++++rt  Ck+G  CkF+H++
  Potri.014G159500.2 140 KSCPYYMRTRSCKFGVACKFHHPQ 163
                         66********************97 PP
4zf-CCCH35.91.3e-11287313127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +++++Cr+f+ tGtCkyG+ Ck++H++
  Potri.014G159500.2 287 PGQPECRHFMSTGTCKYGSDCKYHHPK 313
                         5789*********************96 PP
5zf-CCCH31.72.5e-10334358226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         +++ C++++ +G+Ck+G++C++ H+
  Potri.014G159500.2 334 GQAVCPDYSMYGICKFGPTCRYDHP 358
                         7899********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.9534977IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-64976IPR000571Zinc finger, CCCH-type
PfamPF006428.1E-95275IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-55476IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-45574IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.64391119IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-591118IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-994118IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-695119IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-497118IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.19E-5135164IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.962136164IPR000571Zinc finger, CCCH-type
SMARTSM003560.029138163IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-9139163IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.5E-4141162IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.53286314IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-6286313IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-9288313IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-7290315IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.7E-6292313IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.53332360IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-6332359IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-6333358IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-7334358IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MPDHNNRQVK SNAVSNQSAE NIEEAIWRLK IHDHQEQGGM AQSSPYPDRP GAPDCGYYLR  60
TGLCGYGSNC RFNHPVYAAL GAQLREELPE RVGQPDCGYY LKTGTCKYGS TCKYHHPRDR  120
NGAGPVSFNA LGLPMRQDEK SCPYYMRTRS CKFGVACKFH HPQPASLGTS FSLTGAAAFG  180
STGSPIVPSS GLPYVGGLPT WSLPRAPLMS GTNLQGPQAY MPVVVSPSPG IIPVPGWNTY  240
VGNLNPMSSS SILGSNRAYD SRNQGDSGSG GQVHLLSTVS PILPERPGQP ECRHFMSTGT  300
CKYGSDCKYH HPKERIAQLA TNTMGLLGLP SRPGQAVCPD YSMYGICKFG PTCRYDHPIH  360
TYPYNYSLSL PSLSIMDSSL ITYPRMAQAA PVTLSKLPDL IHNPDGASYN KHQNPDTSTK  420
ISDDPTEQAG SPPPHSSQAS SEPSHD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G159500.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002320490.10.0zinc finger CCCH domain-containing protein 3 isoform X1
TrEMBLB9IAL10.0B9IAL1_POPTR; Uncharacterized protein
STRINGPOPTR_0014s15770.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-104C3H family protein