PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G159500.4
Common NamePOPTR_0014s15770g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 408aa    MW: 43773.2 Da    PI: 8.267
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G159500.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.73.1e-111336326
                        S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                         + C +++rtG C yG++C+F+H+
  Potri.014G159500.4 13 APDCGYYLRTGLCGYGSNCRFNHP 36
                        589********************9 PP
2zf-CCCH36.67.6e-125579327
                        S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                        ++ C ++++tGtCkyG++Ck++H++
  Potri.014G159500.4 55 QPDCGYYLKTGTCKYGSTCKYHHPR 79
                        789********************96 PP
3zf-CCCH352.5e-11101124427
                         ---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                         + C++++rt  Ck+G  CkF+H++
  Potri.014G159500.4 101 KSCPYYMRTRSCKFGVACKFHHPQ 124
                         66********************97 PP
4zf-CCCH361.1e-11248274127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +++++Cr+f+ tGtCkyG+ Ck++H++
  Potri.014G159500.4 248 PGQPECRHFMSTGTCKYGSDCKYHHPK 274
                         5789*********************96 PP
5zf-CCCH31.92.3e-10295319226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         +++ C++++ +G+Ck+G++C++ H+
  Potri.014G159500.4 295 GQAVCPDYSMYGICKFGPTCRYDHP 319
                         7899********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.3E-61037IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.9531038IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-91336IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-51537IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-41635IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.6435280IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-55279IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-95579IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-65680IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-45879IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.06E-596125IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.96297125IPR000571Zinc finger, CCCH-type
SMARTSM003560.02999124IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-9100124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.6E-4102123IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-6247274IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.53247275IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-9249274IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-7251276IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-6253274IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-6293320IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.53293321IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-6294319IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-7295319IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MAQSSPYPDR PGAPDCGYYL RTGLCGYGSN CRFNHPVYAA LGAQLREELP ERVGQPDCGY  60
YLKTGTCKYG STCKYHHPRD RNGAGPVSFN ALGLPMRQDE KSCPYYMRTR SCKFGVACKF  120
HHPQPASLGT SFSLTGAAAF GSTGSPIVPS SGLPYVGGLP TWSLPRAPLM SGTNLQGPQA  180
YMPVVVSPSP GIIPVPGWNT YVGNLNPMSS SSILGSNRAY DSRNQGDSGS GGQVHLLSTV  240
SPILPERPGQ PECRHFMSTG TCKYGSDCKY HHPKERIAQL ATNTMGLLGL PSRPGQAVCP  300
DYSMYGICKF GPTCRYDHPI HTYPYNYSLS LPSLSIMDSS LITYPRMAQA APVTLSKLPD  360
LIHNPDGASY NKHQNPDTST KISDDPTEQA GSPPPHSSQA SSEPSHD*
Functional Description ? help Back to Top
Source Description
UniProtPossesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G159500.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002320490.10.0zinc finger CCCH domain-containing protein 3 isoform X1
SwissprotQ94AD91e-104C3H3_ARATH; Zinc finger CCCH domain-containing protein 3
TrEMBLB9IAL10.0B9IAL1_POPTR; Uncharacterized protein
STRINGPOPTR_0014s15770.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.25e-97C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]