PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.014G176500.2

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

FAR1

Protein Properties

Length: 215aa MW: 24735 Da PI: 8.4827

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.014G176500.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	97.5	1.5e-30	58	146	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY++YA++vGF +r+++ ++s r+g++++r++vC+keg+r+ + ++ +++r++ra+tr gCka+++vkkek gkw+vt++++eHnH+l+p Potri.014G176500.2 58 FYDAYATHVGFIMRVDAFRRSMRDGKVVWRRLVCNKEGFRKLRPRR-SENRKPRAVTREGCKAMIVVKKEKAGKWVVTRFVKEHNHPLVP 146 9*****************************************99.9*************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.4E-29	58	146	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MSQSQMDENA SASMSEDGDM DQIVESSNGK ELAISEASSD MEPCVGMEFE SEEAAKVFYD 60 AYATHVGFIM RVDAFRRSMR DGKVVWRRLV CNKEGFRKLR PRRSENRKPR AVTREGCKAM 120 IVVKKEKAGK WVVTRFVKEH NHPLVPTPAN GRRTDEKDVK IRELTAELQR ERKRSAAYQE 180 QLDMVLRDME EHSNHLSRNI DDIVQSVKEI ESRR*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.629	0.0	bud\| leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.014G176500.2

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024441354.1	1e-155	protein FAR1-RELATED SEQUENCE 2
Swissprot	Q9SZL8	4e-30	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2K1XXK1	1e-154	A0A2K1XXK1_POPTR; FAR1 family protein
STRING	EMJ01654	1e-127	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	3e-90	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Potri.014G176500.2

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]