PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.015G007000.1
Common NamePOPTR_0015s00940g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 153aa    MW: 16837.7 Da    PI: 4.0667
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.015G007000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM89.46.3e-28101331128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgk. 88 
                         +p G+rF+P+d++l+v+yLkkk+ g++l++ +vi+++d+y + P +Lp   +k++   ew+fFs+r++ +         t++gy     + 
  Potri.015G007000.1  10 VPTGYRFSPNDDDLIVHYLKKKILGQQLPA-DVIPTTDVYASSPDKLPlDDFKGGVAnEWFFFSTRSEDA-----DIILTENGYYAVDPEg 94 
                         589***************************.99***************7666665444*******98864.....4568999**9966552 PP

                 NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         + ++   k++ vg  ktL+fy+g+ p+g++tdW+++e+++
  Potri.015G007000.1  95 TAPIAW-KDKIVGYAKTLTFYQGSPPNGSETDWMVEEFSV 133
                         677777.8999***************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.29E-305136IPR003441NAC domain
PROSITE profilePS5100529.22910152IPR003441NAC domain
PfamPF023651.5E-1611132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MASGAQATNV PTGYRFSPND DDLIVHYLKK KILGQQLPAD VIPTTDVYAS SPDKLPLDDF  60
KGGVANEWFF FSTRSEDADI ILTENGYYAV DPEGTAPIAW KDKIVGYAKT LTFYQGSPPN  120
GSETDWMVEE FSVNAEFVPI NKDDLSTQEK VM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-22913314140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.015G007000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2091849e-48AC209184.1 Populus trichocarpa clone POP031-J16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002321971.21e-107NAC domain-containing protein 41
TrEMBLA0A3N7HSH01e-106A0A3N7HSH0_POPTR; Uncharacterized protein
STRINGPOPTR_0015s00940.11e-106(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14452718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.23e-26NAC domain containing protein 41