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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Potri.015G008300.1 |
| Common Name | POPTR_0015s01070g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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| Family |
GRAS |
| Protein Properties |
Length: 435aa MW: 49283.5 Da PI: 7.5603 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.015G008300.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 406.2 | 3.2e-124 | 36 | 433 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaal....... 81
l++lL++cA+ ++++d ++a++lL+ ls ++sp+gd+++Rl+ f++AL+ rl r++ ++ a +p + +n +
Potri.015G008300.1 36 LRQLLVTCADLITQSDYSAAKRLLSILSSNSSPYGDSIERLVYQFVRALSLRLDRHGIPTSPAPAPHVFNINNivhT------Sppcgtnn 120
689****************************************************6655555555555554443330......24445556 PP
GRAS 82 ...............kl..fsevsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgsp 150
++ +++++P+++fshltaNqaIleav+g +++HiiDfdi++G+QWp+L+qaLa+Rp ++pp+lRiTg g+
Potri.015G008300.1 121 kmlnsydsdqetlrsCYlsLNQITPFIRFSHLTANQAILEAVQGGqQAIHIIDFDIMHGVQWPPLMQALADRPnntlHPPPMLRITGTGH- 210
6666667777776652257***********************987699*************************777777***********. PP
GRAS 151 esgskeeleetgerLakfAeelgvpfefnvl.....vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsP 236
+ + l++tg+rL kfA++lg++f+f++l ++l+ ++++ + p+EalaVn+vl lhr+l+++ +L+ +k l+P
Potri.015G008300.1 211 ---DLNILHRTGDRLLKFAQSLGLRFQFHPLlllnnDPTTLALYLPSAITLLPDEALAVNCVLYLHRFLKDDSREL---LLFLHKIKALNP 295
...9**************************977532233666778999*********************6555444...59********** PP
GRAS 237 kvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpv 327
kvv+v+e+ea+hn++ Fl+rfleal++y alfdslea+lp++++er vE+ ++grei ++va+eg+ rrerh+++e+W+++l+++GF++v
Potri.015G008300.1 296 KVVTVAEREANHNQPLFLQRFLEALDHYKALFDSLEATLPPNNRERLAVEQIWFGREILDIVAAEGEGRRERHQKFETWEMMLKSVGFNKV 386
******************************************************************************************* PP
GRAS 328 plsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
pls +a +qaklllr ++ s+gy+++ ++s++lgW++++L+s+S+W
Potri.015G008300.1 387 PLSPFALSQAKLLLRLHYpSEGYQLQILKNSFFLGWQNHSLFSISSW 433
*********************************************** PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0010014 | Biological Process | meristem initiation |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 435 aa
Download sequence Send
to blast |
MLGSQLQSQS QLMSSSTSHV QGQEEEIPRP QTAFQLRQLL VTCADLITQS DYSAAKRLLS 60
ILSSNSSPYG DSIERLVYQF VRALSLRLDR HGIPTSPAPA PHVFNINNIV HTSPPCGTNN 120
KMLNSYDSDQ ETLRSCYLSL NQITPFIRFS HLTANQAILE AVQGGQQAIH IIDFDIMHGV 180
QWPPLMQALA DRPNNTLHPP PMLRITGTGH DLNILHRTGD RLLKFAQSLG LRFQFHPLLL 240
LNNDPTTLAL YLPSAITLLP DEALAVNCVL YLHRFLKDDS RELLLFLHKI KALNPKVVTV 300
AEREANHNQP LFLQRFLEAL DHYKALFDSL EATLPPNNRE RLAVEQIWFG REILDIVAAE 360
GEGRRERHQK FETWEMMLKS VGFNKVPLSP FALSQAKLLL RLHYPSEGYQ LQILKNSFFL 420
GWQNHSLFSI SSWH*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed in the axils of leaf primordia and leaves from P1 to P20/22. In the axil of P1, expressed in 3 to 5 cell layers including the L1 to L3 layers of the shoot apical meristem (SAM). Then, extends from 1 or 2 cell layers in the adaxial-abaxial dimension. From P5 to P22, expression is restricted to a 1 to 2 cell-layer domain located within primordium. In the axils of older leaf primordia, expression decreases until it is no longer detectable in the axils of primordia older than P20/P22. {ECO:0000269|PubMed:12730136}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:18500650}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC209044 | 0.0 | AC209044.1 Populus trichocarpa clone POP057-J01, complete sequence. |
