PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.015G011800.1

Common Name

POPTR_0015s01410g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Nin-like

Protein Properties

Length: 257aa MW: 29712.8 Da PI: 6.3222

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.015G011800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	80.7	1.5e-25	147	195	4	52
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 + le+++k+F++pi++AA+e++v+lTvLK++CR++ I+RWPhRkiksl Potri.015G011800.1 147 ALGLEEIQKHFNMPITQAAREMKVGLTVLKKRCRELKIMRWPHRKIKSL 195 5789*******************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.086	130	216	IPR003035	RWP-RK domain
Pfam	PF02042	1.0E-22	148	195	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MENPPDFDVW DLGVDDQDTF QKISELPPFE SLFDPSILLP LVPRDENINQ FKHLEDISSD 60 NIFSESNLES WYNQENAYID TKPVLNPGIH ASFGQNLDNN VIKGDHHLKG FSMLLVQSVC 120 ASSSSVKEEE EEEEESRKMS GRKRSVALGL EEIQKHFNMP ITQAAREMKV GLTVLKKRCR 180 ELKIMRWPHR KIKSLNSLIN NVKEMGLSEY DAIMLEEHKR LIEKLPDLEL TERTKKLRQA 240 CFKANYKRRR LSAAYH*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	246	250	KRRRL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.015G011800.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002321399.3	0.0	protein RKD4
TrEMBL	A0A2K1XGA6	0.0	A0A2K1XGA6_POPTR; Uncharacterized protein
STRING	POPTR_0015s01410.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6898	32	47
Representative plant	OGRP567	17	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	9e-41	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Potri.015G011800.1
Entrez Gene	7464539