PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.015G015300.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 123aa    MW: 13383.7 Da    PI: 11.0247
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.015G015300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.42.2e-12592287
                        EEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3  2 fkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr 87
                         kvl +  +  ++rl++p  f+++      gg     ++ +  + sgr+W+++++  +k+g+   v++kGW  Fv ++ Lk gD v F  +++
  Potri.015G015300.1  5 SKVLRK--TDIKKRLSVPTGFLSSLpsfnaGG---HAVDFQAVHGSGRVWTFRCSNIRKKGHpkPVISKGWLAFVASKSLKGGDKVQFLKEKN 92
                        566633..333457********9997655322...345566666777*******8856665567************************85544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508638.5152104IPR003340B3 DNA binding domain
CDDcd100173.15E-15393No hitNo description
SMARTSM010190.00614115IPR003340B3 DNA binding domain
SuperFamilySSF1019361.63E-11492IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-14493IPR015300DNA-binding pseudobarrel domain
PfamPF023621.1E-9592IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MARFSKVLRK TDIKKRLSVP TGFLSSLPSF NAGGHAVDFQ AVHGSGRVWT FRCSNIRKKG  60
HPKPVISKGW LAFVASKSLK GGDKVQFLKE KNEAGAKTHA YEIQAEKEIK IFGAVLGYAP  120
II*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.015G015300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2134281e-154AC213428.1 Populus trichocarpa clone POP094-E14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011006364.12e-72PREDICTED: putative AP2/ERF and B3 domain-containing protein Os01g0140700
TrEMBLA0A2K1XGH71e-83A0A2K1XGH7_POPTR; Uncharacterized protein
STRINGPOPTR_0015s01760.11e-75(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2060778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.13e-06related to ABI3/VP1 1