PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.015G015500.1
Common NamePOPTR_0015s01780g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 234aa    MW: 25853.4 Da    PI: 11.2062
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.015G015500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.71.8e-12591287
                        EEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3  2 fkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87
                         kvl +  +  ++rl++p  f+++      gg     ++ +  d sgr+W++++++  k+  + v++kGW  Fv +++Lk+gD v F  +++
  Potri.015G015500.1  5 SKVLRK--TDIKKRLSVPTGFLSSLpsfnaGG---HAVDFQTVDGSGRVWTFRCSIrMKGHPKPVISKGWLAFVASKNLKVGDKVHFLKKKN 91
                        555633..333457********9998765432...346677778899*******8843444459*********************9985443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.0092106IPR003340B3 DNA binding domain
CDDcd100173.85E-18392No hitNo description
SMARTSM010190.00684105IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-13491IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.9E-16492IPR015300DNA-binding pseudobarrel domain
PfamPF023629.3E-10691IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MARFSKVLRK TDIKKRLSVP TGFLSSLPSF NAGGHAVDFQ TVDGSGRVWT FRCSIRMKGH  60
PKPVISKGWL AFVASKNLKV GDKVHFLKKK NDAGAKTHAY EIRAEKEIKI FAKPTDDRGE  120
DAPSRQKKNE RGVPQRRKTT TEATASTITN KRVSHRLGGG QSVNDMLNQH HYQQNPKVCH  180
HWRAGKCNTF PCPSVVHREL PASPPHASVN GGGVGTKRGF SGNDSSSFSW RRE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.015G015500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2134281e-151AC213428.1 Populus trichocarpa clone POP094-E14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGPOPTR_0015s01780.11e-173(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2060778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.12e-12zinc finger WD40 repeat protein 1