PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.015G015800.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 132aa    MW: 14720 Da    PI: 10.4343
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.015G015800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.45.2e-13492189
                        EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                  B3  1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrse 89
                        f k+l++ dv k  rl +p + +++    +g     +  +  de+g++W++k+++rk++    vl+k W  Fv+++gLk+gD++ F+ + ++ 
  Potri.015G015800.1  4 FSKKLSKTDVRK--RLAVPTRSLSSLpsfDGA--HAVYFQAADERGEVWTFKCSIRKRRHPkPVLSKDWLAFVDSKGLKAGDMIEFYKETNEA 92
                        778896666655..5999****9999976444..567789999**********8855554469************************544444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508638.6142103IPR003340B3 DNA binding domain
SuperFamilySSF1019361.75E-12491IPR015300DNA-binding pseudobarrel domain
CDDcd100171.65E-17488No hitNo description
PfamPF023624.2E-10493IPR003340B3 DNA binding domain
SMARTSM010190.00144103IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.9E-17494IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MAKFSKKLSK TDVRKRLAVP TRSLSSLPSF DGAHAVYFQA ADERGEVWTF KCSIRKRRHP  60
KPVLSKDWLA FVDSKGLKAG DMIEFYKETN EAATAHAYKV RAERQIKIFG VVFGYAPITA  120
ITHDSSDVSP I*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.015G015800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2134280.0AC213428.1 Populus trichocarpa clone POP094-E14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024442553.15e-93AP2/ERF and B3 domain-containing protein Os01g0693400-like
TrEMBLA0A2K1XGJ61e-91A0A2K1XGJ6_POPTR; Uncharacterized protein
STRINGPOPTR_0248s00220.11e-51(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2060778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.22e-07related to ABI3/VP1 2