PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.015G016000.1
Common NamePOPTR_0015s01820g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 120aa    MW: 13628 Da    PI: 10.66
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.015G016000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.11.8e-147102497
                         E-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS. CS
                  B3   4 vltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr. 87 
                         +lt+    +++rl++p kf+++     gg     +  + + e+g++W+++++ rkk+     vl++GW  F++ ++L++gD + F+  ++ 
  Potri.015G016000.1   7 ILTKT--DTEKRLSVPSKFLKSLppfkGGH---AVFFQAKEERGKVWTFQCSTRKKGPYqkPVLSRGWLAFARKKKLEVGDKIEFYKARDq 92 
                         55443..44557********9999874333...455788889*********77555433469************************88887 PP

                         SEE..EEEEE CS
                  B3  88 sefelvvkvf 97 
                         ++++++ +v+
  Potri.015G016000.1  93 ETEKPFYGVR 102
                         8888887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.462104IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.9E-18393IPR015300DNA-binding pseudobarrel domain
CDDcd100174.42E-18387No hitNo description
SuperFamilySSF1019362.55E-14493IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.4E-64104IPR003340B3 DNA binding domain
PfamPF023623.9E-126102IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MASCSKILTK TDTEKRLSVP SKFLKSLPPF KGGHAVFFQA KEERGKVWTF QCSTRKKGPY  60
QKPVLSRGWL AFARKKKLEV GDKIEFYKAR DQETEKPFYG VRVEREIKIL GAVIGCMNP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15476RKKGPYQKPVLSRGWLAFARKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.015G016000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2134280.0AC213428.1 Populus trichocarpa clone POP094-E14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011008418.17e-74PREDICTED: B3 domain-containing transcription factor NGA4-like
TrEMBLB9IDU08e-82B9IDU0_POPTR; Uncharacterized protein
STRINGPOPTR_0015s01820.11e-82(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2060778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.12e-08B3 family protein