PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.015G016200.1
Common NamePOPTR_0015s01840g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 120aa    MW: 13591 Da    PI: 11.4651
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.015G016200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.12.8e-17488186
                        EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                  B3  1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldg 86
                        f+k+l    + +++rl++p +f+++    +g+    +t   +de+g+ W++++++rk+++    vlt+GW  Fvk+++L +gD+v F   +
  Potri.015G016200.1  4 FEKIL--RETDTKKRLSVPIRFLRSLppfKGS--HAVTFEATDEKGKAWTFQCSIRKTGQYpkPVLTRGWVAFVKSKKLHVGDTVRFI--K 88
                        77888..66667778**********9987555..56789999***********9999998899***********************98..2 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.012105IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-19493IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.9E-74104IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-15494IPR015300DNA-binding pseudobarrel domain
PfamPF023621.1E-14488IPR003340B3 DNA binding domain
CDDcd100171.62E-19486No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MAEFEKILRE TDTKKRLSVP IRFLRSLPPF KGSHAVTFEA TDEKGKAWTF QCSIRKTGQY  60
PKPVLTRGWV AFVKSKKLHV GDTVRFIKRK NRATAAISYK VRAEKAIKIF GAPFGHARI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.015G016200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2134280.0AC213428.1 Populus trichocarpa clone POP094-E14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011003894.12e-69PREDICTED: B3 domain-containing transcription factor NGA4-like
RefseqXP_011003895.16e-69PREDICTED: B3 domain-containing transcription factor NGA4-like
TrEMBLA0A2K1XGK36e-81A0A2K1XGK3_POPTR; Uncharacterized protein
STRINGPOPTR_0015s01840.16e-80(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2060778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.11e-10B3 family protein