PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.015G016700.1
Common NamePOPTR_0492s00200g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 120aa    MW: 13525.1 Da    PI: 11.7498
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.015G016700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.92.1e-1412881184
                        HHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3 11 lksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkl 84
                         +++rl++p +f+++      g      +t   +de+g+ W +++++rk++    vl++GW  Fv++++L++gD v F  
  Potri.015G016700.1 12 DTTKRLSVPIRFLRSLppfklG---SHAVTFEATDEKGEAWAFQCSIRKRGHPkPVLQRGWVAFVRSKKLQVGDKVRFIK 88
                        34567*********99998532...2457888999**********8855554469*********************9983 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.6292105IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.8E-17493IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.8E-44104IPR003340B3 DNA binding domain
CDDcd100173.64E-16686No hitNo description
SuperFamilySSF1019362.94E-13695IPR015300DNA-binding pseudobarrel domain
PfamPF023626.8E-121189IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MAQVSKILKK IDTTKRLSVP IRFLRSLPPF KLGSHAVTFE ATDEKGEAWA FQCSIRKRGH  60
PKPVLQRGWV AFVRSKKLQV GDKVRFIKHK NRATAAISYK VRAEKAIKIF GATFGYARI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.015G016700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2134281e-153AC213428.1 Populus trichocarpa clone POP094-E14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011008416.12e-73PREDICTED: B3 domain-containing transcription factor NGA4-like
TrEMBLU7DXJ19e-81U7DXJ1_POPTR; Uncharacterized protein
STRINGPOPTR_0492s00200.11e-81(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2060778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34390.13e-08auxin response factor 22