PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.015G032800.3

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

BBR-BPC

Protein Properties

Length: 239aa MW: 26511.7 Da PI: 10.3805

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.015G032800.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	288.1	3.7e-88	21	238	57	301
GAGA_bind 57 dmaflqrdkalaernkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakek 147 m++ +r +++ + ++k++++l+ +++ + v ++t+s++++q ++++ +++e + +eea ++k + Potri.015G032800.3 21 PMEY-MRGAWIGQ--------REKFINVLPGNHN-------YAAVFPETSSAHHMQV------FQPPYSTKDEP---LELVEEAGVVEKVN 86 2666.66666666........7899999997776.......778999****9998......44455533322...23344555555666 PP GAGA_bind 148 kkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCttt 238 +kkrqr+k pk++kakk k+ ++++k + + + +r+++ kk+ ++ +ng+++D+s +P+PvCsCtG ++qCY+WG+GGWqSaCCtt Potri.015G032800.3 87 GPNKKRQRQKAPKSPKAKKGKRGPQVPKPEDTLSV--QRVRSAKKTAEIMINGINMDISVIPIPVCSCTGNPQQCYRWGCGGWQSACCTTC 175 7788899***********9988877766666..79************************************************ PP GAGA_bind 239 iSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 iSvyPLP+s krrgaRiagrKmS gafkk+LekLa+eGyd+snp+DL++hWAkHGtnkfvtir Potri.015G032800.3 176 ISVYPLPMSMKRRGARIAGRKMSLGAFKKVLEKLAGEGYDFSNPIDLRTHWAKHGTNKFVTIR 238 ************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	1.9E-145	1	238	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	3.5E-100	4	238	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MTSMNGGFNH KDVGVSQPMH PMEYMRGAWI GQREKFINVL PGNHNYAAVF PETSSAHHMQ 60 VFQPPYSTKD EPLELVEEAG VVEKVNGPNK KRQRQKAPKS PKAKKGKRGP QVPKPEDTLS 120 VQRVRSAKKT AEIMINGINM DISVIPIPVC SCTGNPQQCY RWGCGGWQSA CCTTCISVYP 180 LPMSMKRRGA RIAGRKMSLG AFKKVLEKLA GEGYDFSNPI DLRTHWAKHG TNKFVTIR*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal and petal vasculature, in pollen grains, in young rosette, in the lateral and tip of primary roots, and in ovule at the exception of the outer integument. {ECO:0000269\|PubMed:14731261, ECO:0000269\|PubMed:21435046}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.015G032800.3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ982268	0.0	FJ982268.1 Populus trichocarpa GAGA-binding transcriptional activator (BBR/BPC9) gene, complete cds.
GenBank	FJ982269	0.0	FJ982269.1 Populus trichocarpa GAGA-binding transcriptional activator (BBR/BPC9) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024441848.1	1e-180	protein BASIC PENTACYSTEINE2
Refseq	XP_024441849.1	1e-180	protein BASIC PENTACYSTEINE2
Swissprot	Q9LDE2	1e-74	BPC2_ARATH; Protein BASIC PENTACYSTEINE2
TrEMBL	H1ZN52	1e-178	H1ZN52_POPTR; BBR-BPC family protein
STRING	POPTR_0015s05210.1	1e-180	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14685.3	1e-76	basic pentacysteine 2

Link Out ? help Back to Top
Phytozome	Potri.015G032800.3

Publications ? help Back to Top
Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821] Simonini S,Kater MM Class I BASIC PENTACYSTEINE factors regulate HOMEOBOX genes involved in meristem size maintenance. J. Exp. Bot., 2014. 65(6): p. 1455-65 [PMID:24482368]