PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.015G033000.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family BBR-BPC
Protein Properties Length: 197aa    MW: 21895.5 Da    PI: 10.1815
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.015G033000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind1343.2e-41619551259
           GAGA_bind  51 aavaerd.........maflqrdkalaernkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeekl 132
                         + +++rd         +++ +rd++        + +++ +l+ l+ ++s       +  vl+gt+s++++++     +++   +l ++e+ 
  Potri.015G033000.1   6 GGFHHRDtgvwqpmfhIEY-MRDAW--------TGQRETFLNALPGNHS-------YAAVLPGTSSAHHMHM-----FQP--PDLVNHET- 72 
                         5567777444433333333.34444........4446677777776665.......78999***********.....333..33334443. PP

           GAGA_bind 133 ealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCY 223
                            +++ea  ++ke+  +kkrqr+k  k++k kk  + ++++k + +++   + +++ kk+ ++ +ng+++D+s +P+Pv  C G ++qCY
  Potri.015G033000.1  73 -MDQVKEAGVVEKENVPNKKRQRPKALKSPKVKKDMRGPRAPKPEGSPSV--QLVRSAKKTAEIMINGINIDISVIPIPVSLCMG-PQQCY 159
                         .3455677777777777888999999999999999998888876666666..689******************************.8**** PP

           GAGA_bind 224 kWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrK 259
                         +W +GGW S CC t iS+yPLP+stkr g+RiagrK
  Potri.015G033000.1 160 HWVCGGWLSVCCMTCISMYPLPMSTKRHGSRIAGRK 195
                         ***********************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012263.5E-511196IPR010409GAGA-binding transcriptional activator
PfamPF062178.0E-524195IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MASVNGGFHH RDTGVWQPMF HIEYMRDAWT GQRETFLNAL PGNHSYAAVL PGTSSAHHMH  60
MFQPPDLVNH ETMDQVKEAG VVEKENVPNK KRQRPKALKS PKVKKDMRGP RAPKPEGSPS  120
VQLVRSAKKT AEIMINGINI DISVIPIPVS LCMGPQQCYH WVCGGWLSVC CMTCISMYPL  180
PMSTKRHGSR IAGRKK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.015G033000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9822600.0FJ982260.1 Populus trichocarpa GAGA-binding transcriptional activator (BBR/BPC5) pseudogene, complete sequence.
GenBankFJ9822610.0FJ982261.1 Populus trichocarpa GAGA-binding transcriptional activator (BBR/BPC5) pseudogene mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011000745.15e-99PREDICTED: protein BASIC PENTACYSTEINE2-like
RefseqXP_011000747.15e-99PREDICTED: protein BASIC PENTACYSTEINE2-like
RefseqXP_024437765.16e-99protein BASIC PENTACYSTEINE2-like
RefseqXP_024437766.16e-99protein BASIC PENTACYSTEINE2-like
TrEMBLA0A2K1XHD71e-146A0A2K1XHD7_POPTR; Uncharacterized protein
STRINGPOPTR_0012s03740.14e-97(Populus trichocarpa)
STRINGPOPTR_0015s05190.11e-97(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23703283
Representative plantOGRP18651240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01930.27e-36basic pentacysteine1