PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.015G041100.1
Common NamePOPTR_0015s04300g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 186aa    MW: 21182.8 Da    PI: 9.8953
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.015G041100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.82.5e-181360148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W+++Ed++l+d+++++G g+W++ ++  g+ R++k+c++rw++yl
  Potri.015G041100.1 13 KGAWSQQEDQKLIDYIQKHGEGCWRSLPQAAGLLRCGKSCRLRWRNYL 60
                        79******************************99*************7 PP
2Myb_DNA-binding48.91.5e-1568110347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          + ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++
  Potri.015G041100.1  68 GFGEDEEDLIIRLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSH 110
                         5789****************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-23462IPR009057Homeodomain-like
PROSITE profilePS5129415.688860IPR017930Myb domain
SMARTSM007174.1E-141262IPR001005SANT/Myb domain
SuperFamilySSF466891.5E-2812107IPR009057Homeodomain-like
PfamPF002496.6E-171360IPR001005SANT/Myb domain
CDDcd001677.10E-111560No hitNo description
PROSITE profilePS5129423.22861115IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-2363115IPR009057Homeodomain-like
SMARTSM007173.4E-1465113IPR001005SANT/Myb domain
PfamPF002493.4E-1469110IPR001005SANT/Myb domain
CDDcd001672.33E-1071111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MRKPCCDKQY TNKGAWSQQE DQKLIDYIQK HGEGCWRSLP QAAGLLRCGK SCRLRWRNYL  60
RPDLKRDGFG EDEEDLIIRL HALLGNRWSL IAGRLPGRTD NEVKNYWNSH IRKKLESSHR  120
NTGFTRLRAE ISSAARSKRQ ANVPETQVFD SNGGKPEPSN KSSSDINLDL TLSIPSKKLE  180
SSDEN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-291211526128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:9839469}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.015G041100.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002322088.11e-135transcription factor MYB3
RefseqXP_024442261.11e-135transcription factor MYB3
SwissprotQ9S9K92e-68MYB3_ARATH; Transcription factor MYB3
TrEMBLB9IEA01e-134B9IEA0_POPTR; Uncharacterized protein
STRINGPOPTR_0015s04300.11e-135(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26434221
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.18e-71myb domain protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  3. Wada T,Hayashi N,Tominaga-Wada R
    Root hair formation at the root-hypocotyl junction in CPC-LIKE MYB double and triple mutants of Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1089372
    [PMID:26339713]
  4. Wada T,Tominaga-Wada R
    CAPRICE family genes control flowering time through both promoting and repressing CONSTANS and FLOWERING LOCUS T expression.
    Plant Sci., 2015. 241: p. 260-5
    [PMID:26706076]
  5. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  6. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  7. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]