PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.015G041500.3
Common NamePOPTR_0015s04260g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 1064aa    MW: 119105 Da    PI: 9.4928
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.015G041500.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.31.7e-08287330346
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         +WT  Ed+ l+  v++ G  +W  Ia  +g++Rt+ qc sr+q 
  Potri.015G041500.3 287 PWTIKEDKNLLLNVQEKGVTNWFDIAVSLGTNRTPSQCLSRFQR 330
                         8*****************************************96 PP
2Myb_DNA-binding36.41.2e-11339384248
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           WT+eEd +l  av+ +G ++W ++a t+  gR + qc +rw k l
  Potri.015G041500.3 339 REWTKEEDAQLRIAVETYGERDWQSVACTLE-GRAGTQCSNRWKKTL 384
                         68*****************************.***********9975 PP
3Myb_DNA-binding53.36.2e-17392436247
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         grWT +Ed++l+ avk++G++ W++Ia+ ++ gRt  qc++rw + 
  Potri.015G041500.3 392 GRWTLDEDKRLKVAVKLFGPKKWDKIAQFVP-GRTQVQCRERWVNC 436
                         8******************************.***********986 PP
4Myb_DNA-binding46.58.5e-15443486146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         r+ WT+eEd++l+ a+++ G   W+++a++++  Rt++qc  rw  
  Potri.015G041500.3 443 RDEWTEEEDLRLKAAIEECGYC-WSKVAERLP-QRTDNQCLRRWKV 486
                         789*****************99.*********.***********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.935181279IPR017877Myb-like domain
SMARTSM007171.3185281IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-7188204IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-7252292IPR009057Homeodomain-like
SuperFamilySSF466893.22E-14260329IPR009057Homeodomain-like
PROSITE profilePS500908.444284332IPR017877Myb-like domain
SMARTSM007173.5E-7284334IPR001005SANT/Myb domain
CDDcd001676.61E-6287332No hitNo description
PfamPF139211.6E-10288349No hitNo description
Gene3DG3DSA:1.10.10.601.2E-11293340IPR009057Homeodomain-like
SuperFamilySSF466899.31E-18317389IPR009057Homeodomain-like
PROSITE profilePS5129421.328333388IPR017930Myb domain
SMARTSM007178.1E-9337386IPR001005SANT/Myb domain
CDDcd001672.09E-8340384No hitNo description
Gene3DG3DSA:1.10.10.606.6E-16341390IPR009057Homeodomain-like
PROSITE profilePS5129414.793389437IPR017930Myb domain
SMARTSM007175.3E-15390439IPR001005SANT/Myb domain
SuperFamilySSF466898.99E-27391484IPR009057Homeodomain-like
PfamPF002492.0E-15392436IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-21392442IPR009057Homeodomain-like
CDDcd001675.31E-13393435No hitNo description
PROSITE profilePS5129423.606438492IPR017930Myb domain
SMARTSM007176.6E-13442490IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.8E-18443487IPR009057Homeodomain-like
PfamPF002494.0E-13443486IPR001005SANT/Myb domain
CDDcd001674.53E-11445488No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1064 aa     Download sequence    Send to blast
MEKSEVGVSD NSLAERNTAC EVLPVTEQDD NAANLLGDNV EIGNSASAEE NELDSGRLST  60
LELDYSSFPK SAQVFIDAIK RNRSCQKFIQ NKLIQIEARI EENNKLKDKV KILKDFQFSC  120
RKITGMALSL RKDPRIQLVS ARKTSNSKHP KVNGKKVSPL QDGPVENSHV ANYRTALTNF  180
PLSLNRKKWT ETEKENLGKG IRQQFQEMML QFSMDQFSSE GSPEDGKNLD SILVSIRDLE  240
ITPEKIREFL PRVNWDQLAS SYVAGRSGAE CEARWLNFED LLINQSPWTI KEDKNLLLNV  300
QEKGVTNWFD IAVSLGTNRT PSQCLSRFQR SLNARILKRE WTKEEDAQLR IAVETYGERD  360
WQSVACTLEG RAGTQCSNRW KKTLHPAIRR VGRWTLDEDK RLKVAVKLFG PKKWDKIAQF  420
VPGRTQVQCR ERWVNCLDPS MNRDEWTEEE DLRLKAAIEE CGYCWSKVAE RLPQRTDNQC  480
LRRWKVLVPH EVPLLQAARR MQKAALISNF VDRESERPAL GPNDFVPLAI TGPVSDPEKM  540
DQSRKRKRKL SNASKKIRSN RSRKKVQISS KEVPEIPDGT QVGNLGGSRS VVTETTMEYC  600
SENNRHAERG QDHPSSNSNL TPLMTTSFQG VDSGQNQQLP DLHPKGRKPV DRDGNSKSLL  660
LSPPENLDAG IINGDVSQTF HPNSTTSSKK RRAYKQHSRK NICAKSSEGS SVLSETTIDA  720
SALVNDYLDS NLVTTNEEDN ILGQRDAPGK KRVPKLHSES SEWTGSLDCL LPPHENSELR  780
VTSTEIMNKS SLFGTPTNEK RKAFKLPCRR KIRNEEPSRK DQCFAAVPCQ QDTSKKSKAR  840
GKSCSKKVLE TKNEDDVVLA SFLRDKSKKK RLKVAQNADQ ACSSSSMITR PEVLSRVDQP  900
SNGNKLSSAV RNSEGQTCSH GRSSENGLSC DMYAHQSNHM QTERCELDVN NRGIFAPMEG  960
VREPGSIDQE AVLEPGDISP AGSGSRVNTH SHSRKGPQLH SKGAEQPRND TGPDKLSCSV  1020
KNSIGSSSKP TIIGNDIEPG GRSSHSPSAS GEALKYYKRR SKR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-312574844155MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-312574844155MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1543548RKRKRK
210531059LKYYKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.015G041500.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024442777.10.0uncharacterized protein LOC7462515 isoform X3
TrEMBLA0A3N7G0530.0A0A3N7G053_POPTR; Uncharacterized protein
STRINGPOPTR_0015s04260.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.20.0myb domain protein 4r1