PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.015G046300.1

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bHLH

Protein Properties

Length: 275aa MW: 31040.8 Da PI: 7.1318

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.015G046300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.6	4.5e-08	167	214	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR +iN+++ L++++P + k + a +L + ++Y++sLq Potri.015G046300.1 167 SHSLAERVRRGKINERLRCLQDIVPGC----YKTMGMAVMLDEIINYVQSLQ 214 8***********************9....35599999********998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.66E-16	161	230	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.62E-9	161	218	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.3E-15	163	224	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.097	163	213	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.0E-5	167	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.6E-8	169	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MADFTVDLQS FKPPFPFLDI DASMAAINQF TEVNQAIQLD NPIMNNFHSF TPFTSNNFFS 60 HQAPEFPGNF AGSFLPGSFH QNDQNVMPVS QTFTIPAKES EFQESKRRAM DVSESSCMNS 120 YPRVSESGSK KRKSSRRGKR VKSNEEEEEK TREVVHVRAR RGQATDSHSL AERVRRGKIN 180 ERLRCLQDIV PGCYKTMGMA VMLDEIINYV QSLQNQVEFL SMKLTAASTF YDFNAETEAI 240 ETVQRAKAQE TKELQRAMRE GSGGLAQSHS SWPL*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in stems. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Positive regulator of brassinosteroid signaling. {ECO:0000269\|PubMed:12454087}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.015G046300.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269\|PubMed:12454087}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006374179.2	0.0	transcription factor BEE 3
Swissprot	Q8GWK7	1e-70	BEE3_ARATH; Transcription factor BEE 3
TrEMBL	A0A2K1XHY7	0.0	A0A2K1XHY7_POPTR; Uncharacterized protein
STRING	POPTR_0012s05210.1	1e-155	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3360	34	67
Representative plant	OGRP58	16	313

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18400.1	2e-61	BR enhanced expression 1

Link Out ? help Back to Top
Phytozome	Potri.015G046300.1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]