PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.015G074500.1
Common NamePOPTR_0015s08580g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 179aa    MW: 20393.7 Da    PI: 9.7683
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.015G074500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.43.3e-101463654
                        HHHHHHHHHHHHHHHHHHHCTSCCC....TTS-STCHHHHHHHHHHHHHH CS
                 HLH  6 nerErrRRdriNsafeeLrellPkas.kapskKlsKaeiLekAveYIksL 54
                        + +E++RR ++++  ++L +l+P+ + k+++  ls  + Le+A  YIk++
  Potri.015G074500.1 14 KTVEKNRRVHMKDLCFKLASLVPHHFfKPSKDMLSQQDQLELAACYIKQM 63
                        679*********************663666666***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.59E-4668No hitNo description
PROSITE profilePS508889.426863IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.6E-101282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-101282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.4E-71463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0090575Cellular ComponentRNA polymerase II transcription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MEKSNSETSK LDRKTVEKNR RVHMKDLCFK LASLVPHHFF KPSKDMLSQQ DQLELAACYI  60
KQMRERVEKL KRVKEQAITT IQTSRSGMTS MMIGLRLPVI ELRDFGSSIE VVLVSGLNKN  120
FMFYEVITVL SDEGAEVVSA SYSTVGDKVF HTIHAQVRIS RVGVETSRVW ERLQELIS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.015G074500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002322161.11e-129transcription factor bHLH162
TrEMBLB9IEQ21e-128B9IEQ2_POPTR; Uncharacterized protein
STRINGPOPTR_0015s08580.11e-129(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68492141
Representative plantOGRP13451147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.17e-35bHLH family protein