PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.015G095000.2
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 503aa    MW: 57573.4 Da    PI: 9.8703
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.015G095000.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.85.8e-09296335345
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         +WT+eE el+ + ++++G++ Wkt a+ +g  + + ++k+ w+
  Potri.015G095000.2 296 SWTPEEYELIRKFHEKHGSD-WKTLAEALG--KHRFHVKDTWR 335
                         7*******************.********9..56777887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.7220291IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-7223310IPR009057Homeodomain-like
SMARTSM007170.22293340IPR001005SANT/Myb domain
SuperFamilySSF466891.12E-8293348IPR009057Homeodomain-like
PROSITE profilePS500907.004295338IPR017877Myb-like domain
CDDcd001670.0085296325No hitNo description
PfamPF139212.1E-12297355No hitNo description
Gene3DG3DSA:1.10.10.606.8E-9311348IPR009057Homeodomain-like
PROSITE profilePS500907.619339407IPR017877Myb-like domain
SMARTSM007171.4343409IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-7349408IPR009057Homeodomain-like
SuperFamilySSF466891.38E-5387469IPR009057Homeodomain-like
PROSITE profilePS500907.039409462IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MSITQQRKMR RRKRRAKGMR LALRIEGIAN MNNGEGRDRK KEKKKKQKKY GGGGGDTEVI  60
ESAADGKDAG REESTEIVQD KVESSKKEKK KKKKRHNVVQ EAASIQIMAE TMGNQSSVIE  120
SDGGNSSSIK NKARDGKLKV NDEGGKKRKK KAKSLGNGSK EKSSKRVTQM EKDVETTGPS  180
EKSSSKATSK RVSFCEDVEV FPSSDGPSDE KAVGEDGLVR GKRFSHEEDE MVKEAVLNYI  240
DVHGLGAEGL NMVLNCKKHP AIVHCWKEIG AALPWRPRQS VYHRAHILFE RGQNSSWTPE  300
EYELIRKFHE KHGSDWKTLA EALGKHRFHV KDTWRRIKLI NMKKGKWSQD EYQSLFDFVN  360
LDLRLKAFEE RKTKHGMLRD NISWTAISER LETRTDALCC QKWYDQLTSP MVAEGKWLDT  420
DDYRLLMELY DLDACCMEDV DWDNLLEHRS GDLCRKRWNQ MVKHLGDHRN KSFADQVDVL  480
IKRYCPDVLE AREAYNSKPA VP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1512QRKMRRRK
28593KKEKKKKKK
38894KKKKKKR
4145149KKRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.25680.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.015G095000.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024442598.10.0RNA polymerase I termination factor
TrEMBLA0A2K1XKK60.0A0A2K1XKK6_POPTR; Uncharacterized protein
STRINGPOPTR_0003s16730.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-138MYB_related family protein