PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.015G095000.3
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 547aa    MW: 62289.2 Da    PI: 9.1947
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.015G095000.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.76.4e-09340379345
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         +WT+eE el+ + ++++G++ Wkt a+ +g  + + ++k+ w+
  Potri.015G095000.3 340 SWTPEEYELIRKFHEKHGSD-WKTLAEALG--KHRFHVKDTWR 379
                         7*******************.********9..56777887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.7264335IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.9E-7267354IPR009057Homeodomain-like
SuperFamilySSF466891.27E-8337392IPR009057Homeodomain-like
SMARTSM007170.22337384IPR001005SANT/Myb domain
PROSITE profilePS500907.004339382IPR017877Myb-like domain
CDDcd001670.00964340369No hitNo description
PfamPF139212.4E-12341399No hitNo description
Gene3DG3DSA:1.10.10.607.7E-9355392IPR009057Homeodomain-like
PROSITE profilePS500907.619383451IPR017877Myb-like domain
SMARTSM007171.4387453IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-7393452IPR009057Homeodomain-like
SuperFamilySSF466891.55E-5431513IPR009057Homeodomain-like
PROSITE profilePS500907.039453506IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MRIEDNMGLQ KNVHVDLVRN SESEVRRDGK KNRKEKNRED RSSTVAPVVN ILDDNRKEEV  60
VGVQKGPGSE GIANMNNGEG RDRKKEKKKK QKKYGGGGGD TEVIESAADG KDAGREESTE  120
IVQDKVESSK KEKKKKKKRH NVVQEAASIQ IMAETMGNQS SVIESDGGNS SSIKNKARDG  180
KLKVNDEGGK KRKKKAKSLG NGSKEKSSKR VTQMEKDVET TGPSEKSSSK ATSKRVSFCE  240
DVEVFPSSDG PSDEKAVGED GLVRGKRFSH EEDEMVKEAV LNYIDVHGLG AEGLNMVLNC  300
KKHPAIVHCW KEIGAALPWR PRQSVYHRAH ILFERGQNSS WTPEEYELIR KFHEKHGSDW  360
KTLAEALGKH RFHVKDTWRR IKLINMKKGK WSQDEYQSLF DFVNLDLRLK AFEERKTKHG  420
MLRDNISWTA ISERLETRTD ALCCQKWYDQ LTSPMVAEGK WLDTDDYRLL MELYDLDACC  480
MEDVDWDNLL EHRSGDLCRK RWNQMVKHLG DHRNKSFADQ VDVLIKRYCP DVLEAREAYN  540
SKPAVP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129137KKEKKKKKK
2132138KKKKKKR
3189193KKRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.25680.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.015G095000.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024442598.10.0RNA polymerase I termination factor
TrEMBLA0A2K1XKK60.0A0A2K1XKK6_POPTR; Uncharacterized protein
STRINGPOPTR_0003s16730.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-138MYB_related family protein