PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.015G095000.4
Common NamePOPTR_0015s10710g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 539aa    MW: 61411.4 Da    PI: 9.7496
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.015G095000.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.76.3e-09332371345
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         +WT+eE el+ + ++++G++ Wkt a+ +g  + + ++k+ w+
  Potri.015G095000.4 332 SWTPEEYELIRKFHEKHGSD-WKTLAEALG--KHRFHVKDTWR 371
                         7*******************.********9..56777887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.7256327IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.9E-7259346IPR009057Homeodomain-like
SuperFamilySSF466891.27E-8329384IPR009057Homeodomain-like
SMARTSM007170.22329376IPR001005SANT/Myb domain
PROSITE profilePS500907.004331374IPR017877Myb-like domain
PfamPF139212.3E-12333391No hitNo description
Gene3DG3DSA:1.10.10.607.5E-9347384IPR009057Homeodomain-like
PROSITE profilePS500907.619375443IPR017877Myb-like domain
SMARTSM007171.4379445IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-7385444IPR009057Homeodomain-like
SuperFamilySSF466891.51E-5423505IPR009057Homeodomain-like
PROSITE profilePS500907.039445498IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MVGGKQRGKK KTKDEDGSLK EESSLKDRLL ASGGESLTPS IEIMKKKKTR RRSEKHEASA  60
EDVGVSSSLS EGNVDVNNAA DKNERKKKKK EKKKKKSEGH GDCSIANMNN GEGRDRKKEK  120
KKKQKKYGGG GGDTEVIESA ADGKDAGREE STEIVQDKVE SSKKEKKKKK KRHNVVNDEG  180
GKKRKKKAKS LGNGSKEKSS KRVTQMEKDV ETTGPSEKSS SKATSKRVSF CEDVEVFPSS  240
DGPSDEKAVG EDGLVRGKRF SHEEDEMVKE AVLNYIDVHG LGAEGLNMVL NCKKHPAIVH  300
CWKEIGAALP WRPRQSVYHR AHILFERGQN SSWTPEEYEL IRKFHEKHGS DWKTLAEALG  360
KHRFHVKDTW RRIKLINMKK GKWSQDEYQS LFDFVNLDLR LKAFEERKTK HGMLRDNISW  420
TAISERLETR TDALCCQKWY DQLTSPMVAE GKWLDTDDYR LLMELYDLDA CCMEDVDWDN  480
LLEHRSGDLC RKRWNQMVKH LGDHRNKSFA DQVDVLIKRY CPDVLEAREA YNSKPAVP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18389ERKKKKK
28490RKKKKKE
38491RKKKKKEK
48595KKKKKEKKKKK
5162170KKEKKKKKK
6165171KKKKKKR
7165183KKKKKKRHNVVNDEGGKKR
8169186KKRHNVVNDEGGKKRKKK
9181185KKRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.25680.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.015G095000.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024442598.10.0RNA polymerase I termination factor
TrEMBLA0A2K1XKK60.0A0A2K1XKK6_POPTR; Uncharacterized protein
STRINGPOPTR_0015s10710.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-138MYB_related family protein