PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.015G095300.1

Common Name

POPTR_0015s10730g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

GRAS

Protein Properties

Length: 80aa MW: 8644.77 Da PI: 10.4836

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.015G095300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	41.3	2.4e-13	7	76	12	79
GRAS 12 vssgdle..laqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseela 79 +s +l+ a++lL ++++l+s+ gd++qRla++f+++L+arla+s++++ + +++ ++++++ +++l+ Potri.015G095300.1 7 ISLTHLKqgTANELLRQIRQLSSQFGDATQRLAHFFANGLEARLAGSGDGTRSFFTSLSSKRTTAADKLT 76 4444444348******************************************999988888877777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	10.892	1	79	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.0E-11	7	76	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 80 aa Download sequence Send to blast
MICNHCISLT HLKQGTANEL LRQIRQLSSQ FGDATQRLAH FFANGLEARL AGSGDGTRSF 60 FTSLSSKRTT AADKLTFQA*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269\|PubMed:10341448, ECO:0000269\|PubMed:18500650}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.015G095300.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC208932	2e-71	AC208932.1 Populus trichocarpa clone JGIACSB1081-D10, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024467558.1	2e-28	scarecrow-like protein 33
Swissprot	Q9XE58	3e-17	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	B9IFA7	2e-49	B9IFA7_POPTR; Uncharacterized protein
STRING	POPTR_0015s10730.1	3e-50	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-19	SCARECROW-like 14

Link Out ? help Back to Top
Phytozome	Potri.015G095300.1
Entrez Gene	7454711

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]