PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.015G098400.2
Common NamePOPTR_0015s11040g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MIKC_MADS
Protein Properties Length: 173aa    MW: 20120.2 Da    PI: 10.7942
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.015G098400.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.51.8e-28959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krien+  rqvtfskRrng+lKKA+ELS+LC+aev++iifs++gk+y +ss
  Potri.015G098400.2  9 KRIENSASRQVTFSKRRNGLLKKAFELSILCEAEVSLIIFSPSGKFYQFSS 59
                        79***********************************************96 PP
2K-box72.31.4e-2480168896
               K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                         ++ ++  e ++ e++ L++ i + + ++Rh++Ged+ +L lkeL+qLe+qL++++++iRskK++++ e+i+ l+  +++lqeen +L+k
  Potri.015G098400.2  80 DQRSRSLEFWRCEIEELRRTITKTEAQLRHFIGEDIAPLGLKELKQLERQLKTGVERIRSKKKRVISEHIKLLKSEQRALQEENARLQK 168
                         46777899*******************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.693161IPR002100Transcription factor, MADS-box
CDDcd002652.67E-36270No hitNo description
SuperFamilySSF554559.42E-32288IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-29323IPR002100Transcription factor, MADS-box
PfamPF003191.4E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-293859IPR002100Transcription factor, MADS-box
PfamPF014865.2E-2383169IPR002487Transcription factor, K-box
PROSITE profilePS5129713.16186172IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MGRGKVELKR IENSASRQVT FSKRRNGLLK KAFELSILCE AEVSLIIFSP SGKFYQFSSH  60
DMERSVARYR SEVGLPGTND QRSRSLEFWR CEIEELRRTI TKTEAQLRHF IGEDIAPLGL  120
KELKQLERQL KTGVERIRSK KKRVISEHIK LLKSEQRALQ EENARLQKRD FS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-21169169MEF2 CHIMERA
6byy_B2e-21169169MEF2 CHIMERA
6byy_C2e-21169169MEF2 CHIMERA
6byy_D2e-21169169MEF2 CHIMERA
6bz1_A2e-21169169MEF2 CHIMERA
6bz1_B2e-21169169MEF2 CHIMERA
6bz1_C2e-21169169MEF2 CHIMERA
6bz1_D2e-21169169MEF2 CHIMERA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.121310.0bud| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.015G098400.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1450250.0EF145025.1 Populus trichocarpa clone WS0111_J17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002321711.11e-117truncated transcription factor CAULIFLOWER D
TrEMBLA9PA191e-116A9PA19_POPTR; Uncharacterized protein
STRINGVIT_17s0000g01230.t015e-86(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22950.12e-41AGAMOUS-like 19
Publications ? help Back to Top
  1. Ralph SG, et al.
    Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding.
    BMC Genomics, 2008. 9: p. 57
    [PMID:18230180]