PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.015G098900.3
Common NamePOPTR_0015s11100g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family SBP
Protein Properties Length: 382aa    MW: 41809.4 Da    PI: 8.4421
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.015G098900.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP133.76e-4293170178
                         --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         +C v+gC++dls +++yhrrhkvCe hsk+p+v+v g++qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+
  Potri.015G098900.3  93 MCLVDGCNSDLSACRDYHRRHKVCELHSKTPQVTVGGQKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQP 170
                         6**************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.8E-3487155IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.02691168IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.32E-3992173IPR004333Transcription factor, SBP-box
PfamPF031106.1E-3194167IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MDWNLKATSW DLTEFEQGAV PSISIDAFDR STNFGVNRSG GGFSIDLKLG RVGDSSDESI  60
INWKQPGVSK LQPLPSGSTK RARGANSGTQ VAMCLVDGCN SDLSACRDYH RRHKVCELHS  120
KTPQVTVGGQ KQRFCQQCSR FHSLEEFDEG KRSCRKRLDG HNRRRRKPQP DPHSRPPSFL  180
SNYQGTQLFP FSSSHVYPSS TVLNPTWSGV ASTEADGRHH NLHQLPDKQN LFFGSSSSSY  240
HGVKQFPFLH WHSPGLNNQT SPEASVCQPL LRTIALPGSS GASSHSMFCD RLTQIQDSDC  300
ALSLLSSTQT HASGNLMVQH NSVPLSHPIG PTVHDHGLGP IDSVLVFNNR DANVHFPGTF  360
QPQSGGSSGN KAPQTLPFNW E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-2884167184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150167KRSCRKRLDGHNRRRRKP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00555DAPTransfer from AT5G50570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.015G098900.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002322273.30.0squamosa promoter-binding-like protein 13A
RefseqXP_024441807.10.0squamosa promoter-binding-like protein 13A
RefseqXP_024441808.10.0squamosa promoter-binding-like protein 13A
RefseqXP_024441809.10.0squamosa promoter-binding-like protein 13A
TrEMBLA0A2K1XKS20.0A0A2K1XKS2_POPTR; Uncharacterized protein
STRINGPOPTR_0015s11100.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.11e-74SBP family protein